PROJECT INFORMATION
GOLD Project ID
Gp0000535  
Project Name
Nocardia farcinica IFM 10152  
Other Names
  
Legacy ER Project ID
10462  
Legacy GOLD ID
Gc00224  
NCBI BioProject Name Nocardia farcinica IFM 10152
NCBI BioProject ID 13117
NCBI BioProject Accession PRJNA13117
NCBI Locus Tag
NFA  
NCBI BioSample Accession SAMD00061069
PI Ishikawa J
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Alejandro Rodriguez Mojica on 2018-07-23
Project Comments
  
Project Status
Complete and Published  
Project Relevance Animal Pathogen
Human Pathogen
Medical
Sequencing Center Kitasato University (Japan)
National Institute of Infectious Diseases, Japan (Japan)
Chiba University
Collaborating Institute
  
Funding Agency
  
Project Description
The causative agent of nocardiosis, affecting the lung, central nervous system, and and cutaneous tissues of humans and animals.  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information Taxonomy
Entrez
Database
  
Genome Publications Proceedings of the National Academy of Sciences of the United States of America The complete genomic sequence of Nocardia farcinica IFM 10152.
Other Publications
  
PROJECT COMPOSITION
Study Nocardia farcinica IFM 10152
Analysis Projects Nocardia farcinica IFM 10152
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
2-3 kb, 8-10 kb  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
71  
Chromosome Count
1  
Plasmid Count
2  
ORGANISM NAME
GOLD Organism ID Go0000535
Organism Name
Nocardia farcinica IFM 10152  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Nocardia  
Genus Synonyms
  
Species
Nocardia farcinica  
Subspecies
  
Species Synonyms
  
Strain
IFM 10152  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 247156
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Corynebacteriales  
NCBI Family
Nocardiaceae  
NCBI Genus
Nocardia  
NCBI Species
Nocardia farcinica  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Respiratory system  
Ecosystem Subtype
Pulmonary system  
Specific Ecosystem
Sputum  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Filament-shaped  
Motility
Nonmotile  
Sporulation
Sporulating  
Temperature Range
Mesophile  
Temperature Optimum
37  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Filaments
Diseases Nocardiosis
Mastitis
Known Habitats Soil
Host
Fresh water
Metabolisms
  
Phenotypes Pathogen
Energy Sources
  

 

 

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