PROJECT INFORMATION
GOLD Project ID
Gp0000532  
Project Name
Photobacterium profundum SS9  
Other Names
  
Legacy ER Project ID
10459  
Legacy GOLD ID
Gc00227  
NCBI BioProject Name Photobacterium profundum SS9
NCBI BioProject ID 13128
NCBI BioProject Accession PRJNA13128
NCBI Locus Tag
PBPR  
NCBI BioSample Accession SAMEA3138336
PI Vale G
Added By Nikos Kyrpides on 2007-11-27
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
Project Status
Complete and Published  
Project Relevance Biotechnological
Sequencing Center University of Padova
Collaborating Institute
  
Funding Agency
  
Project Description
A moderately barophilic organism isolated from a deep-sea vent.  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information Karyn's Genomes
Isolation
Taxonomy
Entrez
Database
  
Genome Publications "Science (New York, N.Y.)" Life at depth: Photobacterium profundum genome sequence and expression analysis.
Other Publications
  
PROJECT COMPOSITION
Study Photobacterium profundum SS9
Analysis Projects Photobacterium profundum SS9
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
0.5-0.8, 1.5-2.5, 13-16 kbp  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
42  
Chromosome Count
2  
Plasmid Count
1  
ORGANISM NAME
GOLD Organism ID Go0000532
Organism Name
Photobacterium profundum SS9  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Photobacterium  
Genus Synonyms
  
Species
Photobacterium profundum  
Subspecies
  
Species Synonyms
  
Strain
SS9  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC BAA-1253  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 298386
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Vibrionales  
NCBI Family
Vibrionaceae  
NCBI Genus
Photobacterium  
NCBI Species
Photobacterium profundum  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 379911
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Psychrotolerant  
Temperature Optimum
15C  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases None
Known Habitats Marine
Metabolisms
  
Phenotypes Piezophile
Bioluminescent
Barophile
Energy Sources
  

 

 

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