PROJECT NAME
GOLD Project ID
Gp0000521  
Project Name
Idiomarina loihiensis L2TR  
Other Names
  
Legacy ER Project ID
10450  
Legacy GOLD ID
Gc00236  
NCBI BioProject Name Idiomarina loihiensis L2TR
NCBI BioProject ID 10790
NCBI BioProject Accession
PRJNA10790  
NCBI Locus Tag
IL  
NCBI BioSample Accession
SAMN02604184  
PI Alam M
Added By Nikos Kyrpides on 2007-11-27 00:00:00.0
Last Modified By Auto script update processes on 2014-03-26 00:00:00.0
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Biotechnological
Sequencing Center
  
Collaborating Institute University of Hawaii (USA)
Funding Agency National Science Foundation (NSF) (USA)
Project Description
Deep sea bacterium from hydrothermal vent near Hawaii  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Isolation
Entrez
Taxonomy
Database
  
Genome Publications Proceedings of the National Academy of Sciences of the United States of America Genome sequence of the deep-sea gamma-proteobacterium Idiomarina loihiensis reveals amino acid fermentation as a source of carbon and energy.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Idiomarina loihiensis L2TR
Analysis Projects Idiomarina loihiensis L2TR
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
1, 2, 5 kb  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
47  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000521
Organism Name
Idiomarina loihiensis L2TR  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Idiomarina  
Genus Synonyms
  
Species
Idiomarina loihiensis  
Subspecies
  
Species Synonyms
  
Strain
L2TR  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC BAA-735T  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.2851  
Exemplar Name
Idiomarina loihiensis  
Taxon DOI
10.1601/tx.2851  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 283942
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Alteromonadales  
NCBI Family
Idiomarinaceae  
NCBI Genus
Idiomarina  
NCBI Species
Idiomarina loihiensis  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Hydrothermal vents  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 371300
Genbank 16S ID AF288370
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Psychrotolerant  
Temperature Optimum
4-46C  
Salinity
Halophile  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Aquatic
Hot spring
Hydrothermal vent
Marine
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?