PROJECT INFORMATION
GOLD Project ID
Gp0000518  
Project Name
Salmonella enterica enterica sv. Paratyphi A  
Other Names
  
Legacy ER Project ID
10447  
Legacy GOLD ID
Gc00238  
NCBI BioProject Name Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
NCBI BioProject ID 13086
NCBI BioProject Accession PRJNA13086
NCBI Locus Tag
SPA  
NCBI BioSample Accession SAMN02604316
PI McClelland M
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Supratim Mukherjee on 2016-03-22
Project Comments
  
Project Status
Complete and Published  
Project Relevance Human Pathogen
Medical
Sequencing Center Washington University in St. Louis (USA)
Collaborating Institute
  
Funding Agency National Institute of Allergy and Infectious Diseases (USA)
Project Description
Causes typhoid-like disease  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information Entrez
Taxonomy
Wikipedia
Database
  
Genome Publications Nature genetics Comparison of genome degradation in Paratyphi A and Typhi, human-restricted serovars of Salmonella enterica that cause typhoid.
Other Publications
  
PROJECT COMPOSITION
Study Salmonella enterica enterica sv Paratyphi A, ATCC 9150
Analysis Projects Salmonella enterica enterica sv. Paratyphi A
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
1.5 kb, 2-4 kb  
Number Of Reads
92648  
Read Size
  
Vector
  
GC Percent
52  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000518
Organism Name
Salmonella enterica enterica sv. Paratyphi A  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Salmonella  
Genus Synonyms
  
Species
Salmonella enterica  
Subspecies
enterica  
Species Synonyms
  
Strain
ATCC 9150  
Strain Synonyms
  
Serovar-Biovar
Paratyphi A  
Culture Collection ID
ATCC 9150  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
2  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 295319
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Enterobacterales  
NCBI Family
Enterobacteriaceae  
NCBI Genus
Salmonella  
NCBI Species
Salmonella enterica  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Large intestine  
Specific Ecosystem
Fecal  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 681598
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
37  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Pairs
Diseases Gastroenteritis
Salmonellosis
Food poisoning
Typhoid fever
Known Habitats Soil
Host
Food
Gastrointestinal tract
Fresh water
Feces
Metabolisms
  
Phenotypes Pathogen
Energy Sources Chemoorganotroph

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?