PROJECT NAME
GOLD Project ID
Gp0000514  
Project Name
Ruegeria pomeroyi DSS-3  
Other Names
  
Legacy ER Project ID
10443  
Legacy GOLD ID
Gc00242  
NCBI BioProject Name Ruegeria pomeroyi DSS-3
NCBI BioProject ID 281
NCBI BioProject Accession
PRJNA281  
NCBI Locus Tag
SPO  
NCBI BioSample Accession
SAMN02604003  
PI Mary Ann Moran
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Michelle Isbandi on 2015-05-29
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Environmental
Sequencing Center J. Craig Venter Institute (JCVI) (USA)
Collaborating Institute University of Georgia (USA)
Funding Agency National Science Foundation (NSF) (USA)
Project Description
Degrades dimethylsulfoniopropionate in marine environments  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Isolation
Entrez
Taxonomy
Database
  
Genome Publications Nature Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Ruegeria pomeroyi DSS-3
Analysis Projects Ruegeria pomeroyi DSS-3
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
1-2 kb, 12-15 kb  
Number Of Reads
  
Read Size
4109437  
Vector
  
GC Percent
64  
Chromosome Count
1  
Plasmid Count
1  
ORGANISM NAME
GOLD Organism ID Go0000514
Organism Name
Ruegeria pomeroyi DSS-3  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Ruegeria  
Genus Synonyms
Silicibacter  
Species
Ruegeria pomeroyi  
Subspecies
  
Species Synonyms
  
Strain
DSS-3  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 700808  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.1152  
Exemplar Name
Ruegeria pomeroyi  
Taxon DOI
10.1601/tx.11006  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 246200
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhodobacterales  
NCBI Family
Rhodobacteraceae  
NCBI Genus
Ruegeria  
NCBI Species
Ruegeria pomeroyi  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 118527
Genbank 16S ID AF098491
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Aquatic
Fresh water
Metabolisms
  
Phenotypes Sulfur cycle
Energy Sources Heterotroph

 

 

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