| PROJECT INFORMATION | |
|---|---|
GOLD Project ID
|
Gp0000505
|
|
Project Name
|
Staphylococcus epidermidis RP62A
|
|
Other Names
|
|
|
Legacy ER Project ID
|
10435
|
|
Legacy GOLD ID
|
Gc00250
|
| NCBI BioProject Name | Staphylococcus epidermidis RP62A |
|
NCBI BioProject ID
|
64 |
|
NCBI BioProject Accession
|
PRJNA64 |
|
NCBI Locus Tag
|
SERP
|
|
NCBI BioSample Accession
|
SAMN02603975 |
| PI | Gill SR |
| Added By |
Nikos Kyrpides
on 2007-11-27 |
| Last Modified By |
Jon Bertsch
on 2014-04-08 |
| Project Comments |
|
|
Project Status
|
Complete and Published
|
|
Project Relevance
|
Human Pathogen Medical |
|
Sequencing Center
|
J. Craig Venter Institute (JCVI)
(USA)
|
|
Collaborating Institute
|
|
|
Funding Agency
|
National Institute of Allergy and Infectious Diseases
(USA)
|
|
Project Description
|
Pathogenic clinical isolate that causes toxic-shock syndrome and staphylococcal scarlet fever
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
Project Information
|
Taxonomy Entrez Wikipedia |
|
Database
|
|
|
Genome Publications
|
Journal of bacteriology
Insights on evolution of virulence and resistance from the complete genome analysis of an early methicillin-resistant Staphylococcus aureus strain and a biofilm-producing methicillin-resistant Staphylococcus epidermidis strain.
|
|
Other Publications
|
|
| PROJECT COMPOSITION | |
| Study |
Staphylococcus epidermidis RP62A |
| Analysis Projects |
Staphylococcus epidermidis RP62A |
| Number of Analysis Projects |
1 |
| Number of DAPs |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
|
Finishing Goal
|
Level 6: Finished |
|
Sequencing Comments
|
|
|
Sequencing Technology
(MIGS-29)
|
|
|
Library Method
(MIGS-28)
|
2-3 kb, 10-12 kb
|
|
Number Of Reads
|
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
32
|
| Chromosome Count |
1
|
| Plasmid Count |
1
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0000505 |
| Organism Name |
Staphylococcus epidermidis RP62A
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
FIRMICUTES
|
| Genus |
Staphylococcus
|
| Genus Synonyms |
|
| Species |
Staphylococcus epidermidis
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
RP62A
|
| Strain Synonyms |
|
| Serovar-Biovar |
|
| Culture Collection ID |
ATCC 35984
|
| Type Strain |
No
|
| Exemplar DOI |
|
| Exemplar Name |
|
| Taxon DOI |
|
| Biosafety Level |
1
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
176279 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Firmicutes
|
| NCBI Class |
Bacilli
|
| NCBI Order |
Bacillales
|
| NCBI Family |
Staphylococcaceae
|
| NCBI Genus |
Staphylococcus
|
| NCBI Species |
Staphylococcus epidermidis
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Host-associated
|
| Ecosystem Category |
Human
|
| Ecosystem Type |
Unclassified
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
111590 |
| Genbank 16S ID |
|
| Synonym List |
|
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Facultative
|
| Cell Shape |
Coccus-shaped
|
| Motility |
Nonmotile
|
| Sporulation |
Nonsporulating
|
| Temperature Range |
Mesophile
|
| Temperature Optimum |
30 - 37
|
| Salinity |
|
| pH |
|
| Cell Diameter |
|
| Cell Length |
|
| Color |
|
| Gram Staining |
Gram+
|
| Biotic Relationships | Free living |
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
Singles Pairs Clusters |
| Diseases |
Staphylococcal scarlet fever Toxic-shock syndrome Septicemia Nosocomial infection |
| Known Habitats |
Host |
| Metabolisms |
|
| Phenotypes |
Meticillin resistant Pathogen |
| Energy Sources |
|
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