PROJECT INFORMATION | |
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GOLD Project ID
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Gp0000505
|
Project Name
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Staphylococcus epidermidis RP62A
|
Other Names
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Legacy ER Project ID
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10435
|
Legacy GOLD ID
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Gc00250
|
NCBI BioProject Name | Staphylococcus epidermidis RP62A |
NCBI BioProject ID
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64 |
NCBI BioProject Accession
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PRJNA64 |
NCBI Locus Tag
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SERP
|
NCBI BioSample Accession
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SAMN02603975 |
PI | Gill SR |
Added By |
Nikos Kyrpides
on 2007-11-27 |
Last Modified By |
Jon Bertsch
on 2014-04-08 |
Project Comments |
|
Project Status
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Complete and Published
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Project Relevance
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Human Pathogen Medical |
Sequencing Center
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J. Craig Venter Institute (JCVI)
(USA)
|
Collaborating Institute
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|
Funding Agency
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National Institute of Allergy and Infectious Diseases
(USA)
|
Project Description
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Pathogenic clinical isolate that causes toxic-shock syndrome and staphylococcal scarlet fever
|
Project Information Visibility
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Public |
PROJECT TYPE | |
Specimen
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Organism |
Nucleic Acid
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DNA |
Sequencing Strategy
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Whole Genome Sequencing
|
EXTERNAL PROJECT LINKS | |
Project Information
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|
Database
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Genome Publications
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Journal of bacteriology
Insights on evolution of virulence and resistance from the complete genome analysis of an early methicillin-resistant Staphylococcus aureus strain and a biofilm-producing methicillin-resistant Staphylococcus epidermidis strain.
|
Other Publications
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PROJECT COMPOSITION | |
Study |
Staphylococcus epidermidis RP62A |
Organism |
Staphylococcus epidermidis RP62A |
Analysis Projects |
Staphylococcus epidermidis RP62A |
Number of Analysis Projects |
1 |
Number of DAPs |
0
|
SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
Level 6: Finished |
Finishing Goal
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Level 6: Finished |
Sequencing Comments
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|
Sequencing Technology
(MIGS-29)
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|
Library Method
(MIGS-28)
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2-3 kb, 10-12 kb
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Number Of Reads
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|
Read Size
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Vector
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|
GC Percent |
32
|
Chromosome Count |
1
|
Plasmid Count |
1
|
ORGANISM NAME | |
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GOLD Organism ID |
Go0000505 |
Organism Name |
Staphylococcus epidermidis RP62A
|
Other names (alias, synonyms, short names, common names) |
|
Organism Domain |
BACTERIAL
|
Phylogeny |
FIRMICUTES
|
Genus |
Staphylococcus
|
Genus Synonyms |
|
Species |
Staphylococcus epidermidis
|
Subspecies |
|
Species Synonyms |
|
Strain |
RP62A
|
Strain Synonyms |
|
Serovar-Biovar |
|
Culture Collection ID |
ATCC 35984
|
Type Strain |
No
|
Exemplar DOI |
|
Exemplar Name |
|
Taxon DOI |
|
Biosafety Level |
1
|
Organism Comments |
|
Cultured |
Yes
|
Culture Type |
Isolate
|
Organism Type |
Natural
|
Uncultured Type |
|
Commercial Strain |
|
Commercial Strain Comments |
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ORGANISM TAXONOMY
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|
NCBI Taxonomy ID |
176279 |
NCBI Superkingdom |
Bacteria
|
NCBI Kingdom |
|
NCBI Phylum |
Firmicutes
|
NCBI Class |
Bacilli
|
NCBI Order |
Bacillales
|
NCBI Family |
Staphylococcaceae
|
NCBI Genus |
Staphylococcus
|
NCBI Species |
Staphylococcus epidermidis
|
ISOLATION CLASSIFICATION | |
Ecosystem |
Host-associated
|
Ecosystem Category |
Human
|
Ecosystem Type |
Unclassified
|
Ecosystem Subtype |
Unclassified
|
Specific Ecosystem |
Unclassified
|
ORGANISM EXTERNAL REFERENCES | |
Strain Info ID |
111590 |
Genbank 16S ID |
|
GENERAL PROPERTIES | |
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Oxygen Requirement |
Facultative
|
Cell Shape |
Coccus-shaped
|
Motility |
Nonmotile
|
Sporulation |
Nonsporulating
|
Temperature Range |
Mesophile
|
Temperature Optimum |
30 - 37
|
Salinity |
|
pH |
|
Cell Diameter |
|
Cell Length |
|
Color |
|
Gram Staining |
Gram+
|
Biotic Relationships | Free living |
Symbiotic Physical Interaction |
|
Symbiotic Relationship |
|
Symbiont Name |
|
Symbiont Taxon ID |
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Cell Arrangements |
Singles Pairs Clusters |
Diseases |
Staphylococcal scarlet fever Toxic-shock syndrome Septicemia Nosocomial infection |
Known Habitats |
Host |
Metabolisms |
|
Phenotypes |
Meticillin resistant Pathogen |
Energy Sources |
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