PROJECT INFORMATION
GOLD Project ID
Gp0000482  
Project Name
Dictyostelium discoideum AX4  
Other Names
  
Legacy ER Project ID
10419  
Legacy GOLD ID
Gc00266, Gi0010419  
NCBI BioProject Name Dictyostelium discoideum AX4
NCBI BioProject Accession PRJNA201
NCBI Locus Tag
DDB  
NCBI BioSample Accession SAMN02953606
PI Kuspa A
Added By Nikos Kyrpides on 2007-11-27
Last Modified By JGI automated process on 2014-05-20
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Model Organism
Sequencing Center Association Nationale Recherche Technologie (France)
Collaborating Institute
  
Funding Agency NIH (USA)
German Research Foundation (DFG) (Germany)
European Union (EU) (European Union)
Project Description
Whole chromosome shotgun (WCS) sequencing, assembly, and annotation project  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications Nature The genome of the social amoeba Dictyostelium discoideum.

Other Publications
  
Ignored Publications
  
Unassigned Publications Molecular & general genetics : MGG 263(3):514-9 The mitochondrial DNA of Dictyostelium discoideum: complete sequence, gene content and genome organization.

Gene 153(1):49-55 A group-I intron in the mitochondrial large-subunit ribosomal RNA-encoding gene of Dictyostelium discoideum: same site localization in alga and in vitro self-splicing.

Show more publications...

Current genetics 31(1):80-8 Group-I introns in the cytochrome c oxidase genes of Dictyostelium discoideum: two related ORFs in one loop of a group-I intron, a cox1/2 hybrid gene and an unusually large cox3 gene.

Current genetics 33(4):304-10 A ribosomal protein gene cluster is encoded in the mitochondrial DNA of Dictyostelium discoideum: UGA termination codons and similarity of gene order to Acanthamoeba castellanii.

Journal of molecular evolution 39(6):579-88 The Dictyostelium discoideum mitochondrial genome: a primordial system using the universal code and encoding hydrophilic proteins atypical of metazoan mitochondrial DNA.

Molecular & general genetics : MGG 257(2):124-31 Characterization of a novel small RNA encoded by Dictyostelium discoideum mitochondrial DNA.

DNA research : an international journal for rapid publication of reports on genes and genomes 2(3):129-32 Mitochondrial ribosomal protein L11 gene of Dictyostelium discoideum resides not in the nuclear genome but in the mitochondrial genome.

Nature 418(6893):79-85 Sequence and analysis of chromosome 2 of Dictyostelium discoideum.

Plant Mol. Biol. 15(4):659-60 ORF209 of Dictyostelium discoideum mitochondrial DNA has a homologue in chloroplast DNA.

Journal of molecular evolution 40(6):616-21 Dictyostelium discoideum mitochondrial DNA encodes a NADH:ubiquinone oxidoreductase subunit which is nuclear encoded in other eukaryotes.

Current genetics 27(3):249-56 Codon usage, genetic code and phylogeny of Dictyostelium discoideum mitochondrial DNA as deduced from a 7.3-kb region.

Proceedings of the National Academy of Sciences of the United States of America 93(11):5562-6 Ordered yeast artificial chromosome clones representing the Dictyostelium discoideum genome.

Genetics 148(3):1117-25 Dictyostelium discoideum nuclear plasmid Ddp5 is a chimera related to the Ddp1 and Ddp2 plasmid families.

Gene 191(1):115-21 A site-specific DNA endonuclease specified by one of two ORFs encoded by a group I intron in Dictyostelium discoideum mitochondrial DNA.

SRA Experiment
  
PROJECT COMPOSITION
Study Dictyostelium discoideum AX4
Organism Dictyostelium discoideum AX4
Analysis Projects Dictyostelium discoideum AX4
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal Level 6: Finished
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
22  
Chromosome Count
6  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0008021
Organism Name
Dictyostelium discoideum AX4  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
PROTISTS-MYCETOZOA  
Genus
Dictyostelium  
Genus Synonyms
  
Species
Dictyostelium discoideum  
Subspecies
  
Species Synonyms
  
Strain
AX4  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
ATCC 201386  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 352472
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
  
NCBI Phylum
Evosea  
NCBI Class
Eumycetozoa  
NCBI Order
Dictyosteliales  
NCBI Family
Dictyosteliaceae  
NCBI Genus
Dictyostelium  
NCBI Species
Dictyostelium discoideum  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 695743
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Soil
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?

 

 

 

 

 

  Changing the SP Sequencing Strategy will also effect these items:

 

Do you want to continue with this Sequencing Strategy change?