PROJECT INFORMATION
GOLD Project ID
Gp0000457  
Project Name
Thermobifida fusca YX  
Other Names
  
Legacy ER Project ID
10397  
Legacy GOLD ID
Gc00288  
NCBI BioProject Name Thermobifida fusca YX
NCBI BioProject ID 94
NCBI BioProject Accession PRJNA94
NCBI Locus Tag
Tfu  
NCBI BioSample Accession SAMN02598543
PI Robert Blankenship
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
Project Status
Complete and Published  
Project Relevance Biofuels
Bioenergy
Biotechnological
Human Pathogen
Medical
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Cornell University (USA)
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Thermophilic organism found in decaying organic matter.  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Taxonomy
Entrez
Database
  
Genome Publications Journal of bacteriology Genome sequence and analysis of the soil cellulolytic actinomycete Thermobifida fusca YX.
Other Publications
  
PROJECT COMPOSITION
Study Thermobifida fusca YX
Analysis Projects Thermobifida fusca YX
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
3Kb, 40Kb  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
68  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000457
Organism Name
Thermobifida fusca YX  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Thermobifida  
Genus Synonyms
  
Species
Thermobifida fusca  
Subspecies
  
Species Synonyms
  
Strain
YX  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC BAA-629  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 269800
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Streptosporangiales  
NCBI Family
Nocardiopsaceae  
NCBI Genus
Thermobifida  
NCBI Species
Thermobifida fusca  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Solid waste  
Ecosystem Type
Composting  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 501250
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Sporulating  
Temperature Range
Thermophile  
Temperature Optimum
50 - 55  
Salinity
  
pH
4 - 10  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Farmer's lung
Mushroom worker's disease
Respiratory infection
Known Habitats Host
Self-heated organic materials
Metabolisms Cellulose degrader
Degrades organic material
Phenotypes Pathogen
Energy Sources
  

 

 

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