PROJECT INFORMATION
GOLD Project ID
Gp0000452  
Project Name
Cupriavidus pinatubonensis JMP134  
Other Names
  
Legacy ER Project ID
10393  
Legacy GOLD ID
Gc00292  
NCBI BioProject Name Cupriavidus pinatubonensis JMP134
NCBI BioProject ID 10646
NCBI BioProject Accession PRJNA10646
NCBI Locus Tag
Reut  
NCBI BioSample Accession SAMN02598255
PI Gonzalez Ojeda, Bernardo
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Supratim Mukherjee on 2018-06-20
Project Comments
  
Project Status
Complete and Published  
Project Relevance Environmental
Bioremediation
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute ANRT (France)
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Model organism for hydrogen oxidation and used for bioremediation of aromatic compounds  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications PloS one 5(3):e9729 The complete multipartite genome sequence of Cupriavidus necator JMP134, a versatile pollutant degrader.
Other Publications
  
PROJECT COMPOSITION
Study Ralstonia eutropha JMP-134
Organism Cupriavidus pinatubonensis JMP134
Analysis Projects Cupriavidus pinatubonensis JMP134
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
3 kb, 40 kb  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
64  
Chromosome Count
2  
Plasmid Count
2  
ORGANISM NAME
GOLD Organism ID Go0000452
Organism Name
Cupriavidus pinatubonensis JMP134  
Other names (alias, synonyms, short names, common names)
Ralstonia eutropha JMP134  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-BETA  
Genus
Cupriavidus  
Genus Synonyms
Ralstonia  
Species
Cupriavidus pinatubonensis  
Subspecies
  
Species Synonyms
eutropha  
Strain
JMP134  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 4058  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 264198
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Betaproteobacteria  
NCBI Order
Burkholderiales  
NCBI Family
Burkholderiaceae  
NCBI Genus
Cupriavidus  
NCBI Species
Cupriavidus pinatubonensis  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 2875
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
30  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Soil
Fresh water
Metabolisms Degrades pollutants
Phenotypes
  
Energy Sources Heterotroph
Chemolithoautotroph

 

 

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