PROJECT NAME
GOLD Project ID
Gp0000446  
Project Name
Nitrobacter winogradskyi Nb-255  
Other Names
  
Legacy ER Project ID
10388  
Legacy GOLD ID
Gc00298  
NCBI BioProject Name Nitrobacter winogradskyi Nb-255
NCBI BioProject ID 13474
NCBI BioProject Accession
PRJNA13474  
NCBI Locus Tag
Nwi  
NCBI BioSample Accession
SAMN02598308  
PI Arp, Daniel J.
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Biotechnological
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Nitrite-oxidizing bacterium  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Entrez
Wikipedia
Taxonomy
Database
  
Genome Publications Applied and environmental microbiology Genome sequence of the chemolithoautotrophic nitrite-oxidizing bacterium Nitrobacter winogradskyi Nb-255.
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Five Bacteria involved in Nitrification
Analysis Projects Nitrobacter winogradskyi Nb-255
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
3 kb, 8 kb, 40 kb  
Number Of Reads
47312  
Read Size
  
Vector
pUC18, pMCL200, pCC1Fos  
GC Percent
62  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000446
Organism Name
Nitrobacter winogradskyi Nb-255  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Nitrobacter  
Genus Synonyms
  
Species
Nitrobacter winogradskyi  
Subspecies
  
Species Synonyms
  
Strain
Nb-255  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 25391  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.1485  
Exemplar Name
Nitrobacter winogradskyi  
Taxon DOI
10.1601/tx.1485  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 323098
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhizobiales  
NCBI Family
Bradyrhizobiaceae  
NCBI Genus
Nitrobacter  
NCBI Species
Nitrobacter winogradskyi  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 104032
Genbank 16S ID L35506
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Soil
Terrestrial
Metabolisms Carbon dioxide fixation
Nitrifying
Nitrite-oxidizer
Phenotypes Biofilm
Energy Sources Lithotroph

 

 

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