PROJECT NAME
GOLD Project ID
Gp0000438  
Project Name
Pelobacter carbinolicus Bd1, GraBd1  
Other Names
  
Legacy ER Project ID
10380  
Legacy GOLD ID
Gc00306  
NCBI BioProject Name Pelobacter carbinolicus DSM 2380
NCBI BioProject ID 13337
NCBI BioProject Accession
PRJNA13337  
NCBI Locus Tag
Pcar  
NCBI BioSample Accession
SAMN02598295  
PI Lovley, Derek
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Biotechnological
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute University of Massachusetts, Amherst
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Iron- and sulfur-reducing anaerobe isolated from sediment and sludge  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications BMC genomics 11(40):40 Evolution of electron transfer out of the cell: comparative genomics of six Geobacter genomes.
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Single Microbes GTL
Analysis Projects Pelobacter carbinolicus Bd1, GraBd1
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
55  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000438
Organism Name
Pelobacter carbinolicus Bd1, GraBd1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-DELTA  
Genus
Pelobacter  
Genus Synonyms
  
Species
Pelobacter carbinolicus  
Subspecies
  
Species Synonyms
  
Strain
DSM 2380  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 2380  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.3635  
Exemplar Name
Pelobacter carbinolicus  
Taxon DOI
10.1601/tx.3635  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 338963
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Deltaproteobacteria  
NCBI Order
Desulfuromonadales  
NCBI Family
Desulfuromonadaceae  
NCBI Genus
Pelobacter  
NCBI Species
Pelobacter carbinolicus  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Sediment  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 157960
Genbank 16S ID U23141
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Fresh water
Marine
Mud
Sludge
Metabolisms Iron reducer
Phenotypes
  
Energy Sources
  

 

 

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