PROJECT INFORMATION
GOLD Project ID
Gp0000426  
Project Name
Hydrogenovibrio crunogenus XCL-2  
Other Names
  
Legacy ER Project ID
10370  
Legacy GOLD ID
Gc00316  
NCBI BioProject Name Hydrogenovibrio crunogenus XCL-2
NCBI BioProject ID 13018
NCBI BioProject Accession PRJNA13018
NCBI Locus Tag
Tcr  
NCBI BioSample Accession SAMN02598288
PI Scott, Kathleen
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Supratim Mukherjee on 2017-11-09
Project Comments
  
Project Status
Complete and Published  
Project Relevance Biotechnological
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute University of South Florida (USA)
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Sulfur-oxidizing bacterium isolated from hydrothermal vent  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Entrez
Taxonomy
Database
  
Genome Publications PLoS biology The genome of deep-sea vent chemolithoautotroph Thiomicrospira crunogena XCL-2.
Other Publications
  
PROJECT COMPOSITION
Study Hydrogenovibrio crunogenus XCL-2
Analysis Projects Hydrogenovibrio crunogenus XCL-2
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
3 kb, 7 kb, 35 kb  
Number Of Reads
50000  
Read Size
  
Vector
  
GC Percent
43  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000426
Organism Name
Hydrogenovibrio crunogenus XCL-2  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Hydrogenovibrio  
Genus Synonyms
  
Species
Hydrogenovibrio crunogenus  
Subspecies
  
Species Synonyms
  
Strain
XCL-2  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 317025
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Thiotrichales  
NCBI Family
Piscirickettsiaceae  
NCBI Genus
Hydrogenovibrio  
NCBI Species
Hydrogenovibrio crunogenus  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Hydrothermal vents  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Spiral-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
28 - 32  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases None
Known Habitats Marine
Hot spring
Aquatic
Hydrothermal vent
Deep sea
Metabolisms Desulfurylates coal
Carbon dioxide fixation
Sulfur oxidizer
Phenotypes
  
Energy Sources Chemoautotroph

 

 

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