PROJECT NAME
GOLD Project ID
Gp0000412  
Project Name
Sulfurimonas denitrificans DSM 1251  
Other Names
  
Legacy ER Project ID
10358  
Legacy GOLD ID
Gc00328  
NCBI BioProject Name Sulfurimonas denitrificans DSM 1251
NCBI BioProject ID 13019
NCBI BioProject Accession
PRJNA13019  
NCBI Locus Tag
Suden  
NCBI BioSample Accession
SAMN02598289  
PI Scott, Kathleen
Added By Nikos Kyrpides on 2007-11-27 00:00:00.0
Last Modified By Jon Bertsch on 2014-04-08 00:00:00.0
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Biotechnological
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Sulfur-oxidizing bacterium isolated from estuarine mud  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Isolation
Database
  
Genome Publications Applied and environmental microbiology Genome of the epsilonproteobacterial chemolithoautotroph Sulfurimonas denitrificans.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Thiomicrospira denitrificans
Analysis Projects Sulfurimonas denitrificans DSM 1251
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
2-3 kb, 30 kb  
Number Of Reads
  
Read Size
  
Vector
pUC18, pFos1  
GC Percent
34  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000412
Organism Name
Sulfurimonas denitrificans DSM 1251  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-EPSILON  
Genus
Sulfurimonas  
Genus Synonyms
Thiomicrospira  
Species
Sulfurimonas denitrificans  
Subspecies
  
Species Synonyms
  
Strain
DSM 1251  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 1251  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.2331  
Exemplar Name
Sulfurimonas denitrificans  
Taxon DOI
10.1601/tx.9790  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 326298
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Epsilonproteobacteria  
NCBI Order
Campylobacterales  
NCBI Family
Helicobacteraceae  
NCBI Genus
Sulfurimonas  
NCBI Species
Sulfurimonas denitrificans  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Intertidal zone  
Specific Ecosystem
Estuary  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 109901
Genbank 16S ID L40808
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Spiral-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
26  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases None
Known Habitats Marine
Mud
Metabolisms Carbon dioxide fixation
Desulfurylates coal
Nitrate reducer
Sulfur oxidizer
Phenotypes
  
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?