PROJECT INFORMATION
GOLD Project ID
Gp0000410  
Project Name
Magnetospirillum magneticum AMB-1  
Other Names
  
Legacy ER Project ID
10356  
Legacy GOLD ID
Gc00330  
NCBI BioProject Name Magnetospirillum magneticum AMB-1
NCBI BioProject ID 16217
NCBI BioProject Accession PRJNA16217
NCBI Locus Tag
AMB  
NCBI BioSample Accession SAMD00061077
PI Matsunaga T
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Alejandro Rodriguez Mojica on 2018-07-23
Project Comments
  
Project Status
Complete and Published  
Project Relevance Biotechnological
Sequencing Center Tokyo University of Agriculture and Technology (Japan)
Collaborating Institute
  
Funding Agency Ministry of Education, Culture, Sports and Technology (MEXT), Japan (Japan)
Project Description
Magnetotactic bacterium  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information Taxonomy
Entrez
Database
  
Genome Publications DNA research : an international journal for rapid publication of reports on genes and genomes Complete genome sequence of the facultative anaerobic magnetotactic bacterium Magnetospirillum sp. strain AMB-1.
Other Publications
  
PROJECT COMPOSITION
Study Magnetospirillum magneticum AMB-1
Analysis Projects Magnetospirillum magneticum AMB-1
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
65  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000410
Organism Name
Magnetospirillum magneticum AMB-1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Magnetospirillum  
Genus Synonyms
  
Species
Magnetospirillum magneticum  
Subspecies
  
Species Synonyms
  
Strain
AMB-1  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 700264  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 342108
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhodospirillales  
NCBI Family
Rhodospirillaceae  
NCBI Genus
Magnetospirillum  
NCBI Species
Magnetospirillum magneticum  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Ponds  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 117768
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Spiral-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Aquatic
Host
Fresh water
Ponds
Metabolisms
  
Phenotypes Magnetotactic
Synthesizes magnetosomes
Energy Sources Heterotroph

 

 

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