PROJECT INFORMATION
GOLD Project ID
Gp0000397  
Project Name
Syntrophus aciditrophicus SB  
Other Names
  
Legacy ER Project ID
10345  
Legacy GOLD ID
Gi00645, Gc00341  
NCBI BioProject Name Syntrophus aciditrophicus SB
NCBI BioProject ID 16258
NCBI BioProject Accession PRJNA16258
NCBI Locus Tag
SYN  
NCBI BioSample Accession SAMN02603418
PI Robert Gunsalus
Added By Nikos Kyrpides on 2007-11-27
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
Project Status
Complete and Published  
Project Relevance Global carbon cycle
Biotechnological
Sequencing Center Integrated Genomics (USA)
Collaborating Institute University of Oklahoma (USA)
University of California, Los Angeles (USA)
Funding Agency National Science Foundation (NSF) (USA)
Project Description
Syntrophic benzoate-oxidizing bacterium  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information Taxonomy
Entrez
Database
  
Genome Publications Proceedings of the National Academy of Sciences of the United States of America The genome of Syntrophus aciditrophicus: life at the thermodynamic limit of microbial growth.
Other Publications
  
PROJECT COMPOSITION
Study Syntrophus aciditrophicus SB
Analysis Projects Syntrophus aciditrophicus SB
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
2-3 kb, 30-35 kb  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
51  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000397
Organism Name
Syntrophus aciditrophicus SB  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-DELTA  
Genus
Syntrophus  
Genus Synonyms
  
Species
Syntrophus aciditrophicus  
Subspecies
  
Species Synonyms
  
Strain
SB  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 700169  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.3668  
Exemplar Name
Syntrophus aciditrophicus SB  
Taxon DOI
10.1601/tx.3668  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 56780
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Deltaproteobacteria  
NCBI Order
Syntrophobacterales  
NCBI Family
Syntrophaceae  
NCBI Genus
Syntrophus  
NCBI Species
Syntrophus aciditrophicus  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Wastewater  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 304023
Genbank 16S ID U86447
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
35  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Host
Sludge
Wastewater
Metabolisms Syntrophic
Phenotypes
  
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?