PROJECT INFORMATION
GOLD Project ID
Gp0000394  
Project Name
Synechococcus sp. JA-3-3Ab  
Other Names
  
Legacy ER Project ID
10343  
Legacy GOLD ID
Gi00936, Gc00343  
NCBI BioProject Name Synechococcus sp. JA-3-3Ab
NCBI BioProject ID 16251
NCBI BioProject Accession PRJNA16251
NCBI Locus Tag
CYA  
NCBI BioSample Accession SAMN02604048
PI Devaki Bhaya
Added By Nikos Kyrpides on 2007-11-27
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
Project Status
Complete and Published  
Project Relevance Ocean carbon cycle
Environmental
Sequencing Center J. Craig Venter Institute (JCVI) (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Hot spring microbial mat cyanobacterial strain  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information Wikipedia
Database
  
Genome Publications The ISME journal Population level functional diversity in a microbial community revealed by comparative genomic and metagenomic analyses.
Other Publications
  
PROJECT COMPOSITION
Study Hot spring microbial mat cyanobacterial strain
Analysis Projects Synechococcus sp. JA-3-3Ab
Number of Analysis Projects 1
Number of DAPs
93  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
60  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000394
Organism Name
Synechococcus sp. JA-3-3Ab  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
CYANOBACTERIA  
Genus
Synechococcus  
Genus Synonyms
  
Species
Synechococcus sp. JA-3-3Ab  
Subspecies
  
Species Synonyms
  
Strain
JA-3-3Ab  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 321327
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Cyanobacteria  
NCBI Class
  
NCBI Order
Synechococcales  
NCBI Family
Synechococcaceae  
NCBI Genus
Synechococcus  
NCBI Species
Synechococcus sp. JA-3-3Ab  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Thermal springs  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Coccus-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Thermophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases None
Known Habitats Hot spring
Fresh water
Metabolisms
  
Phenotypes
  
Energy Sources Photosynthetic
Photoautotroph

 

 

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