PROJECT NAME
GOLD Project ID
Gp0000392  
Project Name
Frankia sp. CcI3  
Other Names
  
Legacy ER Project ID
10341  
Legacy GOLD ID
Gi00258, Gc00345  
NCBI BioProject Name Frankia sp. CcI3
NCBI BioProject ID 13963
NCBI BioProject Accession
PRJNA13963  
NCBI Locus Tag
Francci3  
NCBI BioSample Accession
SAMN02199398  
PI Louis Tisa
Added By Nikos Kyrpides on 2007-11-27 00:00:00.0
Last Modified By Auto script update processes on 2014-03-26 00:00:00.0
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Agricultural
Biotechnological
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Lawrence Berkeley National Laboratory (USA)
University of Connecticut (USA)
University of New Hampshire (USA)
Funding Agency National Science Foundation (NSF) (USA)
U.S. Department of Energy (DOE) (USA)
Project Description
Symbiotic nitrogen-fixing plant commensal organism  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Wikipedia
Entrez
Taxonomy
Database
  
Genome Publications Genome research Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Frankia sp. strain CcI3 Sequencing
Analysis Projects Frankia sp. CcI3
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
3 kb, 8 kb, 40 kb  
Number Of Reads
82561  
Read Size
  
Vector
  
GC Percent
70  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000392
Organism Name
Frankia sp. CcI3  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Frankia  
Genus Synonyms
  
Species
Frankia sp. CcI3  
Subspecies
  
Species Synonyms
  
Strain
CcI3  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 106370
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Frankiales  
NCBI Family
Frankiaceae  
NCBI Genus
Frankia  
NCBI Species
Frankia sp. CcI3  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Rhizoplane  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Filament-shaped  
Motility
Nonmotile  
Sporulation
Sporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
ID 1
Term Symbiotic
Symbiotic Physical Interaction
  
Symbiotic Relationship
Mutualistic  
Symbiont Name
Casuarina cunninghamiana  
Symbiont Taxon ID
  
Cell Arrangements Filaments
Diseases None
Known Habitats Host
Plant symbiont
Soil
Metabolisms Nitrogen fixation
Phenotypes Non-Pathogen
Energy Sources Chemoorganotroph

 

 

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