PROJECT INFORMATION
GOLD Project ID
Gp0000391  
Project Name
Rhodopseudomonas palustris HaA2  
Other Names
  
Legacy ER Project ID
10340  
Legacy GOLD ID
Gi00959, Gc00346  
NCBI BioProject Name Rhodopseudomonas palustris HaA2
NCBI BioProject ID 15747
NCBI BioProject Accession PRJNA15747
NCBI Locus Tag
RPB  
NCBI BioSample Accession SAMN02598335
PI Harwood, Caroline
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
Project Status
Complete and Published  
Project Relevance Biotechnological
Hydrogen production
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Metabolically diverse organism important in carbon cycle and bioremediation  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Proceedings of the National Academy of Sciences of the United States of America 105(47):18543-8 Multiple genome sequences reveal adaptations of a phototrophic bacterium to sediment microenvironments.
Other Publications
  
PROJECT COMPOSITION
Study Rhodopseudomonas palustris, 4 strains
Analysis Projects Rhodopseudomonas palustris HaA2
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
2-3 kb, 30 kb  
Number Of Reads
  
Read Size
  
Vector
pUC18, pFos1  
GC Percent
66  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000391
Organism Name
Rhodopseudomonas palustris HaA2  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Rhodopseudomonas  
Genus Synonyms
  
Species
Rhodopseudomonas palustris  
Subspecies
  
Species Synonyms
  
Strain
HaA2  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 316058
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhizobiales  
NCBI Family
Bradyrhizobiaceae  
NCBI Genus
Rhodopseudomonas  
NCBI Species
Rhodopseudomonas palustris  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Sediment  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
25 - 30  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases None
Known Habitats Aquatic
Soil
Fresh water
Metabolisms Nitrogen fixation
Pollutant degrader
Carbon dioxide fixation
Hydrogen production
Phenotypes
  
Energy Sources Phototroph

 

 

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