PROJECT NAME
GOLD Project ID
Gp0000387  
Project Name
Novosphingobium aromaticivorans DSM 12444  
Other Names
  
Legacy ER Project ID
10338  
Legacy GOLD ID
Gi00562, Gc00348  
NCBI BioProject Name Novosphingobium aromaticivorans DSM 12444
NCBI BioProject ID 204
NCBI BioProject Accession
PRJNA204  
NCBI Locus Tag
Saro  
NCBI BioSample Accession
SAMN02598432  
PI Margaret Romine
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Animal Pathogen
Biotechnological
Human Pathogen
Medical
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Pacific Northwest National Laboratory
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Unusual gram negative bacterium that has glycosphingolipid instead of lipopolysaccharide and can degrade a wide variety of aromatic hydrocarbons  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Studies Novosphingobium aromaticivorans DSM 12444
Analysis Projects Novosphingobium aromaticivorans DSM 12444
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
65  
Chromosome Count
1  
Plasmid Count
2  
ORGANISM NAME
GOLD Organism ID Go0000387
Organism Name
Novosphingobium aromaticivorans DSM 12444  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Novosphingobium  
Genus Synonyms
  
Species
Novosphingobium aromaticivorans  
Subspecies
  
Species Synonyms
  
Strain
DSM 12444  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 12444  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.1172  
Exemplar Name
Novosphingobium aromaticivorans  
Taxon DOI
10.1601/tx.1218  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 279238
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Sphingomonadales  
NCBI Family
Sphingomonadaceae  
NCBI Genus
Novosphingobium  
NCBI Species
Novosphingobium aromaticivorans  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Sediment  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 44778
Genbank 16S ID U20756
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Obligate aerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Death of coral reefs
Known Habitats Aquatic
Fresh water
Host
Soil
Metabolisms Degrades aromatic hydrocarbons
Phenotypes
  
Energy Sources Chemoheterotroph

 

 

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