PROJECT INFORMATION
GOLD Project ID
Gp0000374  
Project Name
Saccharophagus degradans 2-40  
Other Names
  
Legacy ER Project ID
10326  
Legacy GOLD ID
Gi00373, Gc00360  
NCBI BioProject Name Saccharophagus degradans 2-40
NCBI BioProject ID 316
NCBI BioProject Accession PRJNA316
NCBI Locus Tag
Sde  
NCBI BioSample Accession SAMN02598483
PI Weiner, Ronald
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
Project Status
Complete and Published  
Project Relevance Environmental
Biotechnological
Energy production
Bioremediation
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute University of Maryland (USA)
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Marine bacteria that degrade complex insoluble carbohydrates  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Taxonomy
Entrez
Database
  
Genome Publications PLoS genetics 4(5):e1000087 Complete genome sequence of the complex carbohydrate-degrading marine bacterium, Saccharophagus degradans strain 2-40 T.
Other Publications
  
PROJECT COMPOSITION
Study Saccharophagus degradans 2-40
Analysis Projects Saccharophagus degradans 2-40
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
3 kb, 7 kb, 35 kb  
Number Of Reads
144000  
Read Size
  
Vector
pUC18, pMCL200, pCC1Fos   
GC Percent
46  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000374
Organism Name
Saccharophagus degradans 2-40  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Saccharophagus  
Genus Synonyms
Microbulbifer  
Species
Saccharophagus degradans  
Subspecies
  
Species Synonyms
  
Strain
Feb-40  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 43961  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.9527  
Exemplar Name
Saccharophagus degradans  
Taxon DOI
10.1601/tx.9527  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 203122
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Cellvibrionales  
NCBI Family
Cellvibrionaceae  
NCBI Genus
Saccharophagus  
NCBI Species
Saccharophagus degradans  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Intertidal zone  
Specific Ecosystem
Salt marsh  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 620898
Genbank 16S ID AF055269
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Psychrotolerant  
Temperature Optimum
4-37C  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Fresh water
Metabolisms Ethanol production
Cellulose degrader
Phenotypes
  
Energy Sources
  

 

 

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