PROJECT INFORMATION
GOLD Project ID
Gp0000364  
Project Name
Polaromonas sp. JS666  
Other Names
  
Legacy ER Project ID
10318  
Legacy GOLD ID
Gi00710, Gc00368  
NCBI BioProject Name Polaromonas sp. JS666
NCBI BioProject ID 13121
NCBI BioProject Accession PRJNA13121
NCBI Locus Tag
Bpro  
NCBI BioSample Accession SAMN02598293
PI Gossett, James
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
Project Status
Complete and Published  
Project Relevance Environmental
Bioremediation
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Cornell University (USA)
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
A bacterium which can use the organic contaminant cDCE as a sole carbon and energy source.  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Taxonomy
Entrez
Database
  
Genome Publications Applied and environmental microbiology 74(20):6405-16 The genome of Polaromonas sp. strain JS666: insights into the evolution of a hydrocarbon- and xenobiotic-degrading bacterium, and features of relevance to biotechnology.
Other Publications
  
PROJECT COMPOSITION
Study Proteobacterium strain JS666 and Nocardioides strain JS614
Analysis Projects Polaromonas sp. JS666
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
62  
Chromosome Count
1  
Plasmid Count
2  
ORGANISM NAME
GOLD Organism ID Go0000364
Organism Name
Polaromonas sp. JS666  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-BETA  
Genus
Polaromonas  
Genus Synonyms
  
Species
Polaromonas sp. JS666  
Subspecies
  
Species Synonyms
  
Strain
JS666  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC BAA-500  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 296591
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Betaproteobacteria  
NCBI Order
Burkholderiales  
NCBI Family
Comamonadaceae  
NCBI Genus
Polaromonas  
NCBI Species
Polaromonas sp. JS666  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Contaminated  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 352284
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
20C  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
Yellow  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Sediment
Fresh water
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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