PROJECT INFORMATION
GOLD Project ID
Gp0000346  
Project Name
Rhizobium leguminosarum bv. viciae 3841  
Other Names
  
Legacy ER Project ID
10301  
Legacy GOLD ID
Gi00504, Gc00385  
NCBI BioProject Name Rhizobium leguminosarum bv. viciae 3841
NCBI BioProject ID 344
NCBI BioProject Accession PRJNA344
NCBI Locus Tag
RL  
NCBI BioSample Accession SAMEA1705944
PI Parkhill
Added By Nikos Kyrpides on 2007-11-27
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
Project Status
Complete and Published  
Project Relevance Root Nodulating Bacteria (RNB)
Agricultural
Biotechnological
Sequencing Center Wellcome Trust Sanger Institute (United Kingdom)
Collaborating Institute University of East Anglia
University of York (United Kingdom)
Funding Agency Institute of Food Research (United Kingdom)
Project Description
Bacteria with large complex genomes are abundant and important in nature, and so this genome of Rlv3841 should serve as a further reference point for developing our understanding in many directions.  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information Taxonomy
Entrez
Database
  
Genome Publications Genome biology The genome of Rhizobium leguminosarum has recognizable core and accessory components.
Other Publications
  
PROJECT COMPOSITION
Study Rhizobium leguminosarum bv. viciae 3841
Analysis Projects Rhizobium leguminosarum bv. viciae 3841
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
pUC18, pMAQ1b, m13MP18, pBACe3.6  
GC Percent
61  
Chromosome Count
1  
Plasmid Count
6  
ORGANISM NAME
GOLD Organism ID Go0000346
Organism Name
Rhizobium leguminosarum bv. viciae 3841  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Rhizobium  
Genus Synonyms
  
Species
Rhizobium leguminosarum  
Subspecies
  
Species Synonyms
  
Strain
3841  
Strain Synonyms
  
Serovar-Biovar
viciae  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 216596
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhizobiales  
NCBI Family
Rhizobiaceae  
NCBI Genus
Rhizobium  
NCBI Species
Rhizobium leguminosarum  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Unclassified  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
25 - 30  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Symbiotic
Symbiotic Physical Interaction
Endosymbiotic intracellular  
Symbiotic Relationship
Mutualistic  
Symbiont Name
Legume Plants  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases None
Known Habitats Root nodule
Host
Plant root
Metabolisms Nitrogen fixation
Phenotypes Non-Pathogen
Energy Sources
  

 

 

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