PROJECT INFORMATION
GOLD Project ID
Gp0000345  
Project Name
Ruegeria sp. TM1040  
Other Names
  
Legacy ER Project ID
10300  
Legacy GOLD ID
Gi00515, Gc00386  
NCBI BioProject Name Ruegeria sp. TM1040
NCBI BioProject ID 13040
NCBI BioProject Accession PRJNA13040
NCBI Locus Tag
TM1040  
NCBI BioSample Accession SAMN02598292
PI Mary Ann Moran
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
Project Status
Complete and Published  
Project Relevance Environmental
Biotechnological
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute University of Georgia (USA)
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Dinoflagellate-associated bacterium  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Applied and environmental microbiology Ecological genomics of marine Roseobacters.
Other Publications
  
PROJECT COMPOSITION
Study Roseobacter Clade Strains
Analysis Projects Ruegeria sp. TM1040
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
38 kb, 9.5 kb, 3 kb  
Number Of Reads
59153  
Read Size
  
Vector
  
GC Percent
60  
Chromosome Count
1  
Plasmid Count
2  
ORGANISM NAME
GOLD Organism ID Go0000345
Organism Name
Ruegeria sp. TM1040  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Ruegeria  
Genus Synonyms
Silicibacter  
Species
Ruegeria sp. TM1040  
Subspecies
  
Species Synonyms
  
Strain
TM1040  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 292414
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhodobacterales  
NCBI Family
Rhodobacteraceae  
NCBI Genus
Ruegeria  
NCBI Species
Ruegeria sp. TM1040  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Animal  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Marine
Host
Metabolisms Carbon fixation
Phenotypes Non-Pathogen
Energy Sources Phototroph

 

 

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