PROJECT NAME
GOLD Project ID
Gp0000338  
Project Name
Rubrobacter xylanophilus DSM 9941  
Other Names
  
Legacy ER Project ID
10293  
Legacy GOLD ID
Gi00518, Gc00393  
NCBI BioProject Name Rubrobacter xylanophilus DSM 9941
NCBI BioProject ID 10670
NCBI BioProject Accession
PRJNA10670  
NCBI Locus Tag
Rxyl  
NCBI BioSample Accession
SAMN02598258  
PI John Battista
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Biotechnological
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Louisiana State University
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Thermophilic bacterium capable of degrading hemicellulose and xylan.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Thermophilic
Entrez
Taxonomy
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Rubrobacter xylanophilus DSM 9941
Analysis Projects Rubrobacter xylanophilus DSM 9941
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
70  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000338
Organism Name
Rubrobacter xylanophilus DSM 9941  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Rubrobacter  
Genus Synonyms
  
Species
Rubrobacter xylanophilus  
Subspecies
  
Species Synonyms
  
Strain
DSM 9941  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 9941  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.5725  
Exemplar Name
Rubrobacter xylanophilus  
Taxon DOI
10.1601/tx.5725  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 266117
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Rubrobacteria  
NCBI Order
Rubrobacterales  
NCBI Family
Rubrobacteraceae  
NCBI Genus
Rubrobacter  
NCBI Species
Rubrobacter xylanophilus  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Wastewater  
Ecosystem Type
Industrial wastewater  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 154720
Genbank 16S ID X87135
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Thermophile  
Temperature Optimum
60  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Pairs
Singles
Diseases None
Known Habitats Soil
Metabolisms
  
Phenotypes Non-Pathogen
Radiation resistant
Energy Sources Heterotroph

 

 

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