PROJECT NAME
GOLD Project ID
Gp0000320  
Project Name
Borrelia afzelii PKo  
Other Names
  
Legacy ER Project ID
10278  
Legacy GOLD ID
Gc00408  
NCBI BioProject Name Borrelia afzelii PKo
NCBI BioProject ID 17057
NCBI BioProject Accession
PRJNA17057  
NCBI Locus Tag
BAPKO  
NCBI BioSample Accession
  
PI Gernot Gl┬┐ckner
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Auto script update processes on 2014-05-06
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Comparative analysis
Human Pathogen
Medical
Sequencing Center Fritz Lipmann Institute (Germany)
Collaborating Institute
  
Funding Agency
  
Project Description
An aetological agent of acrodermatitis chronica atrophicans  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications BMC genomics Comparative genome analysis: selection pressure on the Borrelia vls cassettes is essential for infectivity.
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Borrelia afzelii PKo
Analysis Projects Borrelia afzelii PKo
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
1.5 kb  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
28  
Chromosome Count
1  
Plasmid Count
11  
ORGANISM NAME
GOLD Organism ID Go0000320
Organism Name
Borrelia afzelii PKo  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
SPIROCHAETES  
Genus
Borrelia  
Genus Synonyms
  
Species
Borrelia afzelii  
Subspecies
  
Species Synonyms
  
Strain
PKo  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 390236
NCBI Kingdom
  
NCBI Phylum
Spirochaetes  
NCBI Class
Spirochaetia  
NCBI Order
Spirochaetales  
NCBI Family
Borreliaceae  
NCBI Genus
Borreliella  
NCBI Species
Borreliella afzelii  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Skin  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Spiral-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases Acrodermatitis chronica atrophicans
Lyme disease
Known Habitats Host
Metabolisms
  
Phenotypes Pathogen
Energy Sources
  

 

 

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