PROJECT NAME
GOLD Project ID
Gp0000306  
Project Name
Clostridium difficile 630 (epidemic type X)  
Other Names
  
Legacy ER Project ID
10266  
Legacy GOLD ID
Gi00158, Gc00420  
NCBI BioProject Name Clostridium difficile 630
NCBI BioProject ID 78
NCBI BioProject Accession
PRJNA78  
NCBI Locus Tag
CD  
NCBI BioSample Accession
SAMEA1705932  
PI Parkhill
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Auto script update processes on 2014-08-18
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Animal Pathogen
Human Pathogen
Medical
Swine Pathogen
Sequencing Center Wellcome Trust Sanger Institute (United Kingdom)
Collaborating Institute
  
Funding Agency Beowulf Genomics (United Kingdom)
Project Description
Etiological agent of antibiotic-associated diarrhea and pseudomembraneous colitis.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Taxonomy
Entrez
Wikipedia
Database
  
Genome Publications Nature genetics The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome.
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Clostridium difficile 630 (epidemic type X)
Analysis Projects Clostridium difficile 630 (epidemic type X)
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
29  
Chromosome Count
1  
Plasmid Count
1  
ORGANISM NAME
GOLD Organism ID Go0000306
Organism Name
Clostridium difficile 630 (epidemic type X)  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Clostridium  
Genus Synonyms
  
Species
Clostridium difficile  
Subspecies
  
Species Synonyms
  
Strain
630 (epidemic type X)  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC BAA-1382  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
2  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 272563
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Clostridiales  
NCBI Family
Peptostreptococcaceae  
NCBI Genus
Clostridioides  
NCBI Species
Clostridioides difficile  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Unclassified  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 692637
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Obligate anaerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Sporulating  
Temperature Range
Mesophile  
Temperature Optimum
37C  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Chains
Pairs
Singles
Diseases Colitis
Diarrhea
Peritonitis
Known Habitats Host
Metabolisms
  
Phenotypes MDR (Multi-drug resistant)
Pathogen
Energy Sources Chemoorganotroph

 

 

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