PROJECT NAME
GOLD Project ID
Gp0000306  
Project Name
Clostridioides difficile 630  
Other Names
Clostridium difficile 630 (epidemic type X)  
Legacy ER Project ID
10266  
Legacy GOLD ID
Gi00158, Gc00420  
NCBI BioProject Name Clostridioides difficile 630
NCBI BioProject ID 78
NCBI BioProject Accession PRJNA78
NCBI Locus Tag
CD  
NCBI BioSample Accession SAMEA1705932
PI Parkhill
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Supratim Mukherjee on 2017-03-07
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Animal Pathogen
Swine Pathogen
Human Pathogen
Medical
Sequencing Center Wellcome Trust Sanger Institute (United Kingdom)
Collaborating Institute
  
Funding Agency Beowulf Genomics (United Kingdom)
Project Description
Etiological agent of antibiotic-associated diarrhea and pseudomembraneous colitis.  
Project Information Visibility Public
EXTERNAL PROJECT LINKS
Project Information Taxonomy
Entrez
Wikipedia
Database
  
Genome Publications Nature genetics The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome.
Other Publications
  
PROJECT COMPOSITION
Study Clostridioides difficile 630
Analysis Projects Clostridioides difficile 630
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
29  
Chromosome Count
1  
Plasmid Count
1  
ORGANISM NAME
GOLD Organism ID Go0000306
Organism Name
Clostridioides difficile 630  
Other names (alias, synonyms, short names, common names)
Clostridium difficile 630 (epidemic type X)  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Clostridioides  
Genus Synonyms
Clostridium  
Species
Clostridioides difficile  
Subspecies
  
Species Synonyms
  
Strain
630  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC BAA-1382  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
2  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 272563
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Clostridiales  
NCBI Family
Peptostreptococcaceae  
NCBI Genus
Clostridioides  
NCBI Species
Clostridioides difficile  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Unclassified  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 692637
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Obligate anaerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Sporulating  
Temperature Range
Mesophile  
Temperature Optimum
37C  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Pairs
Chains
Diseases Colitis
Diarrhea
Peritonitis
Known Habitats Host
Metabolisms
  
Phenotypes Pathogen
MDR (Multi-drug resistant)
Energy Sources Chemoorganotroph

 

 

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