PROJECT INFORMATION
GOLD Project ID
Gp0000303  
Project Name
Granulibacter bethesdensis CGDNIH1  
Other Names
  
Legacy ER Project ID
10263  
Legacy GOLD ID
Gi01540, Gc00423  
NCBI BioProject Name Granulibacter bethesdensis CGDNIH1
NCBI BioProject Accession PRJNA17111
NCBI Locus Tag
GbCGDNIH1  
NCBI BioSample Accession SAMN02603769
Source Sample ID
PI Holland SM
Added By Nikos Kyrpides on 2007-11-27
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
Project Status
Complete and Published  
Project Relevance Comparative analysis
Human Pathogen
Medical
Sequencing Center Integrated Genomics (USA)
Collaborating Institute National Institute of Allergy and Infectious Diseases (USA)
Funding Agency NIH (USA)
Project Description
Isolated from a patient with chronic granulomatous disease  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications Journal of bacteriology: Genome sequence analysis of the emerging human pathogenic acetic acid bacterium Granulibacter bethesdensis.
PubMed: 17827295
Other Publications
  
Ignored Publications
  
Unassigned Publications PLoS pathogens: 2(4):e28 A novel bacterium associated with lymphadenitis in a patient with chronic granulomatous disease.
PubMed: 16617373
SRA Experiment
  
PROJECT COMPOSITION
Study Granulibacter bethesdensis CGDNIH
Organism Granulibacter bethesdensis CGDNIH1
Analysis Projects Granulibacter bethesdensis CGDNIH1
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
2-3 Kb  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
59  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000303
Organism Name
Granulibacter bethesdensis CGDNIH1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Granulibacter  
Genus Synonyms
  
Species
Granulibacter bethesdensis  
Subspecies
  
Species Synonyms
  
Strain
CGDNIH1  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 17861  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.10752  
Exemplar Name
Granulibacter bethesdensis  
Taxon DOI
10.1601/tx.10752  
Biosafety Level
2  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 391165
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Pseudomonadota  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhodospirillales  
NCBI Family
Acetobacteraceae  
NCBI Genus
Granulibacter  
NCBI Species
Granulibacter bethesdensis  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals: Human  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 689850
Genbank 16S ID AY788950
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
Rod-shaped  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Chronic granulomatous
Known Habitats Host
Lymph nodes
Metabolisms
  
Phenotypes Pathogen
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?

 

 

 

 

 

  Changing the SP Sequencing Strategy will also effect these items:

 

Do you want to continue with this Sequencing Strategy change?