Studies
|
56,334 |
|
Biosamples
|
196,988 |
|
Sequencing Projects
|
525,360 |
|
Analysis Projects
|
384,991 |
| Organisms | 484,221 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0000303
|
|
Project Name
|
Granulibacter bethesdensis CGDNIH1
|
|
Other Names
|
|
|
Legacy ER Project ID
|
10263
|
|
Legacy GOLD ID
|
Gi01540, Gc00423
|
| NCBI BioProject Name | Granulibacter bethesdensis CGDNIH1 |
|
NCBI BioProject Accession
|
PRJNA17111 |
|
NCBI Locus Tag
|
GbCGDNIH1
|
|
NCBI BioSample Accession
|
SAMN02603769 |
|
Source Sample ID
|
|
| PI | Holland SM |
| Added By | Nikos Kyrpides on 2007-11-27 |
| Last Modified By | JGI automated process on 2014-03-26 |
| Project Comments |
|
|
Project Status
|
Complete and Published
|
|
Project Relevance
|
Comparative analysis Human Pathogen Medical |
|
Sequencing Center
|
Integrated Genomics
(USA)
|
|
Collaborating Institute
|
National Institute of Allergy and Infectious Diseases
(USA)
|
|
Funding Agency
|
NIH
(USA)
|
|
Project Description
|
Isolated from a patient with chronic granulomatous disease
|
| Is JGI Project |
No
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
JGI Data Utilization Status
|
|
|
JGI Award DOI
|
|
|
Genome Publications
|
Journal of bacteriology: Genome sequence analysis of the emerging human pathogenic acetic acid bacterium Granulibacter bethesdensis. PubMed: 17827295 |
|
Other Publications
|
|
|
Ignored Publications
|
|
|
Unassigned Publications
|
PLoS pathogens: 2(4):e28 A novel bacterium associated with lymphadenitis in a patient with chronic granulomatous disease. PubMed: 16617373 |
| SRA Experiment |
|
| PROJECT COMPOSITION | |
| Study |
Granulibacter bethesdensis CGDNIH |
| Organism |
Granulibacter bethesdensis CGDNIH1 |
| Analysis Projects |
Granulibacter bethesdensis CGDNIH1 |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
|
Finishing Goal
|
Level 6: Finished |
|
Contamination Screening Input
|
|
|
DNA Amplification Method
|
|
|
Single Cell Lysis Protocol
|
|
|
Single Cell Lysis Approach
|
|
|
Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
|
|
Library Method
(MIGS-28)
|
2-3 Kb
|
|
Library Layout
|
|
|
Library Screening Method
|
|
|
Number Of Reads
|
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
59
|
| Chromosome Count |
1
|
| Plasmid Count |
0
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0000303 |
| Organism Name |
Granulibacter bethesdensis CGDNIH1
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
PROTEOBACTERIA-ALPHA
|
| Genus |
Granulibacter
|
| Genus Synonyms |
|
| Species |
Granulibacter bethesdensis
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
CGDNIH1
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
DSM 17861
|
| Type Strain |
Yes
|
| Exemplar DOI |
10.1601/ex.10752
|
| Exemplar Name |
Granulibacter bethesdensis
|
| Taxon DOI |
10.1601/tx.10752
|
| Biosafety Level |
2
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
391165 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Pseudomonadota
|
| NCBI Class |
Alphaproteobacteria
|
| NCBI Order |
Rhodospirillales
|
| NCBI Family |
Acetobacteraceae
|
| NCBI Genus |
Granulibacter
|
| NCBI Species |
Granulibacter bethesdensis
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Host-associated
|
| Ecosystem Category |
Mammals: Human
|
| Ecosystem Type |
Unclassified
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
689850 |
| Genbank 16S ID |
AY788950 |
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
|
| Cell Shape |
Rod-shaped
|
| Motility |
|
| Sporulation |
|
| Temperature Range |
Mesophile
|
| Salinity |
|
| pH |
|
| Cell Diameter |
|
| Cell Length |
|
| Color |
|
| Gram Staining |
Gram-
|
| Biotic Relationships | Free living |
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
|
| Diseases |
Chronic granulomatous |
| Known Habitats |
Host Lymph nodes |
| Metabolisms |
|
| Phenotypes |
Pathogen |
| Energy Sources |
|
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