PROJECT NAME
GOLD Project ID
Gp0000296  
Project Name
Rikenella microfusus Q-1, DSM 15922  
Other Names
  
Legacy ER Project ID
15151  
Legacy GOLD ID
Gi04620  
NCBI BioProject Name Rikenella microfusus DSM 15922
NCBI BioProject ID 51795
NCBI BioProject Accession
PRJNA51795  
NCBI Locus Tag
Rikmi  
NCBI BioSample Accession
SAMN02441234  
PI Jonathan Eisen
Added By Nikos Kyrpides on 2009-08-03
Last Modified By Auto script update processes on 2014-08-18
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance GEBA
Tree of Life
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency Leibniz Institute (Germany)
U.S. Department of Energy (DOE) (USA)
Project Description
Rikenella microfusus DSM 15922 genome sequencing project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Isolation
GEBA
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies A Genomic Encyclopedia of Bacteria and Archaea (GEBA)
Analysis Projects Rikenella microfusus Q-1, DSM 15922
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 5: Non-contiguous Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX-Titanium
Illumina
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
57  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0000296
Organism Name
Rikenella microfusus Q-1, DSM 15922  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Rikenella  
Genus Synonyms
  
Species
Rikenella microfusus  
Subspecies
  
Species Synonyms
  
Strain
Q-1, DSM 15922  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 15922  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.7966  
Exemplar Name
Rikenella microfusus  
Taxon DOI
10.1601/tx.8012  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 880526
NCBI Kingdom
  
NCBI Phylum
Bacteroidetes  
NCBI Class
Bacteroidia  
NCBI Order
Bacteroidales  
NCBI Family
Rikenellaceae  
NCBI Genus
Rikenella  
NCBI Species
Rikenella microfusus  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Birds  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID L16498
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Obligate anaerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Pairs
Singles
Diseases
  
Known Habitats Bird
Host
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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