PROJECT NAME
GOLD Project ID
Gp0000294  
Project Name
Burkholderia cepacia AMMD  
Other Names
  
Legacy ER Project ID
10256  
Legacy GOLD ID
Gi00924, Gc00430  
NCBI BioProject Name Burkholderia ambifaria AMMD
NCBI BioProject ID 13490
NCBI BioProject Accession
PRJNA13490  
NCBI Locus Tag
Bamb  
NCBI BioSample Accession
SAMN02598309  
PI James Tiedje
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Agricultural
Biocontrol
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Strain used for biocontrol of pea plant phytopathogens.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Taxonomy
Isolation
Entrez
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Burkholderia ambifaria AMMD
Analysis Projects Burkholderia cepacia AMMD
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
67  
Chromosome Count
3  
Plasmid Count
1  
ORGANISM NAME
GOLD Organism ID Go0000294
Organism Name
Burkholderia cepacia AMMD  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-BETA  
Genus
Burkholderia  
Genus Synonyms
  
Species
Burkholderia cepacia  
Subspecies
  
Species Synonyms
  
Strain
AMMD  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC BAA-244  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.1621  
Exemplar Name
Burkholderia ambifaria  
Taxon DOI
10.1601/tx.1621  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 339670
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Betaproteobacteria  
NCBI Order
Burkholderiales  
NCBI Family
Burkholderiaceae  
NCBI Genus
Burkholderia  
NCBI Species
Burkholderia ambifaria  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 681923
Genbank 16S ID AF043302
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
30 - 42  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Host
Rhizosphere
Rhizosphere-colonizing
Metabolisms Nitrogen fixation
Pollutant degrader
Phenotypes
  
Energy Sources
  

 

 

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