PROJECT INFORMATION
GOLD Project ID
Gp0000283  
Project Name
Pediococcus pentosaceus ATCC 25745  
Other Names
  
Legacy ER Project ID
10247  
Legacy GOLD ID
Gi00437, Gc00439  
NCBI BioProject Name Pediococcus pentosaceus ATCC 25745
NCBI BioProject ID 398
NCBI BioProject Accession PRJNA398
NCBI Locus Tag
PEPE  
NCBI BioSample Accession SAMN02598525
PI Steele, James
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
Project Status
Complete and Published  
Project Relevance Food industry
Lactic acid production
Biotechnological
Sequencing Center Fidelity Systems Inc (USA)
DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Utah State University
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
An industrially important lactic acid bacteria.  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Entrez
Taxonomy
Database
  
Genome Publications Proceedings of the National Academy of Sciences of the United States of America Comparative genomics of the lactic acid bacteria.
Other Publications
  
PROJECT COMPOSITION
Study Lactic Acid Bacteria
Analysis Projects Pediococcus pentosaceus ATCC 25745
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
37  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000283
Organism Name
Pediococcus pentosaceus ATCC 25745  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Pediococcus  
Genus Synonyms
  
Species
Pediococcus pentosaceus  
Subspecies
  
Species Synonyms
  
Strain
ATCC 25745  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 25745  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 278197
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Bacilli  
NCBI Order
Lactobacillales  
NCBI Family
Lactobacillaceae  
NCBI Genus
Pediococcus  
NCBI Species
Pediococcus pentosaceus  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 16204
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Coccus-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
30  
Salinity
  
pH
4.5-8  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Tetrads
Diseases None
Known Habitats Plants
Fruits
Metabolisms
  
Phenotypes Non-Pathogen
Energy Sources
  

 

 

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