Studies
|
53,970 |
|
Biosamples
|
170,233 |
|
Sequencing Projects
|
480,729 |
|
Analysis Projects
|
360,451 |
| Organisms | 467,880 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0000278
|
|
Project Name
|
Leuconostoc mesenteroides mesenteroides ATCC 8293
|
|
Other Names
|
|
|
Legacy ER Project ID
|
10242
|
|
Legacy GOLD ID
|
Gi00330, Gc00444
|
| NCBI BioProject Name | Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 |
|
NCBI BioProject Accession
|
PRJNA315 |
|
NCBI Locus Tag
|
LEUM
|
|
NCBI BioSample Accession
|
SAMN02598482 |
| PI | Steele, James |
| Added By |
Nikos Kyrpides
on 2007-11-27 |
| Last Modified By |
Jon Bertsch
on 2014-04-08 |
| Project Comments |
|
|
Project Status
|
Complete and Published
|
|
Project Relevance
|
Food industry Fermentation Lactic acid production Biotechnological |
|
Sequencing Center
|
Fidelity Systems Inc
(USA)
DOE Joint Genome Institute (JGI) (USA) |
|
Collaborating Institute
|
North Carolina State University
(USA)
|
|
Funding Agency
|
U.S. Department of Energy (DOE)
(USA)
|
|
Project Description
|
Used in industrial food fermentations
|
| Is JGI Project |
Yes
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
JGI Data Utilization Status
|
|
|
JGI Award DOI
|
|
| JGI Portal Download | Raw Sequence Data |
|
Genome Publications
|
Proceedings of the National Academy of Sciences of the United States of America
Comparative genomics of the lactic acid bacteria.
|
|
Other Publications
|
|
|
Ignored Publications
|
|
|
Unassigned Publications
|
|
| SRA Experiment |
|
| PROJECT COMPOSITION | |
| Study |
Lactic Acid Bacteria |
| Organism |
Leuconostoc mesenteroides mesenteroides ATCC 8293 |
| Analysis Projects |
Leuconostoc mesenteroides mesenteroides ATCC 8293 |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
|
Finishing Goal
|
Level 6: Finished |
|
Contamination Screening Input
|
|
|
DNA Amplification Method
|
|
|
Single Cell Lysis Protocol
|
|
|
Single Cell Lysis Approach
|
|
|
Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
|
|
Library Method
(MIGS-28)
|
|
|
Library Layout
|
|
|
Library Screening Method
|
|
|
Number Of Reads
|
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
38
|
| Chromosome Count |
1
|
| Plasmid Count |
1
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0000278 |
| Organism Name |
Leuconostoc mesenteroides mesenteroides ATCC 8293
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
FIRMICUTES
|
| Genus |
Leuconostoc
|
| Genus Synonyms |
|
| Species |
Leuconostoc mesenteroides
|
| Subspecies |
mesenteroides
|
| Species Synonyms |
|
| Strain |
ATCC 8293
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
ATCC 8293
|
| Type Strain |
Yes
|
| Exemplar DOI |
10.1601/ex.5569
|
| Exemplar Name |
Leuconostoc mesenteroides mesenteroides
|
| Taxon DOI |
10.1601/tx.5569
|
| Biosafety Level |
1
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
203120 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Firmicutes
|
| NCBI Class |
Bacilli
|
| NCBI Order |
Lactobacillales
|
| NCBI Family |
Lactobacillaceae
|
| NCBI Genus |
Leuconostoc
|
| NCBI Species |
Leuconostoc mesenteroides
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Engineered
|
| Ecosystem Category |
Food production
|
| Ecosystem Type |
Unclassified
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
505624 |
| Genbank 16S ID |
X95978 |
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Facultative
|
| Cell Shape |
Coccus-shaped
|
| Motility |
Nonmotile
|
| Sporulation |
|
| Temperature Range |
Mesophile
|
| Salinity |
|
| pH |
|
| Cell Diameter |
|
| Cell Length |
|
| Color |
|
| Gram Staining |
Gram+
|
| Biotic Relationships | Free living |
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
Singles Pairs Chains |
| Diseases |
None |
| Known Habitats |
|
| Metabolisms |
|
| Phenotypes |
Vancomycin resistant |
| Energy Sources |
|
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