PROJECT INFORMATION
GOLD Project ID
Gp0000272  
Project Name
Roseobacter denitrificans OCh 114  
Other Names
  
Legacy ER Project ID
10237  
Legacy GOLD ID
Gi00726, Gc00448  
NCBI BioProject Name Roseobacter denitrificans OCh 114
NCBI BioProject ID 16426
NCBI BioProject Accession PRJNA16426
NCBI Locus Tag
RD1  
NCBI BioSample Accession SAMN02602987
PI Blankenship RE
Added By Nikos Kyrpides on 2007-11-27
Last Modified By JGI automated process on 2014-05-20
Project Comments
  
Project Status
Complete and Published  
Project Relevance Environmental
Biotechnological
Sequencing Center TGen (USA)
Arizona State University (USA)
Collaborating Institute
  
Funding Agency National Science Foundation (NSF) (USA)
Project Description
An anaerobic marine microorganism  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information Taxonomy
Entrez
Database
  
Genome Publications Journal of bacteriology The complete genome sequence of Roseobacter denitrificans reveals a mixotrophic rather than photosynthetic metabolism.
Other Publications
  
PROJECT COMPOSITION
Study Roseobacter denitrificans OCh 114
Analysis Projects Roseobacter denitrificans OCh 114
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
2-3, 6-8, 27-47  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
59  
Chromosome Count
1  
Plasmid Count
4  
ORGANISM NAME
GOLD Organism ID Go0000272
Organism Name
Roseobacter denitrificans Shiba O Ch 114  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Roseobacter  
Genus Synonyms
  
Species
Roseobacter denitrificans  
Subspecies
  
Species Synonyms
  
Strain
Shiba O Ch 114  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 33942  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.1137  
Exemplar Name
Roseobacter denitrificans  
Taxon DOI
10.1601/tx.1137  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 375451
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhodobacterales  
NCBI Family
Rhodobacteraceae  
NCBI Genus
Roseobacter  
NCBI Species
Roseobacter denitrificans  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 109965
Genbank 16S ID M96746
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Host
Fresh water
Metabolisms
  
Phenotypes Non-Pathogen
Energy Sources Phototroph
Photosynthetic
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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