PROJECT NAME
GOLD Project ID
Gp0000267  
Project Name
Syntrophobacter fumaroxidans MPOB  
Other Names
  
Legacy ER Project ID
10232  
Legacy GOLD ID
Gi00642, Gc00453  
NCBI BioProject Name Syntrophobacter fumaroxidans MPOB
NCBI BioProject ID 13013
NCBI BioProject Accession
PRJNA13013  
NCBI Locus Tag
Sfum  
NCBI BioSample Accession
SAMN02598285  
PI Michael McInerney
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Bioreactors
Biotechnological
Carbon cycle
Energy production
Hydrogen production
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Syntrophic propionate-oxidizing bacterium  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Isolation
Entrez
Taxonomy
Database
  
Genome Publications Standards in genomic sciences 7(1):91-106 Complete genome sequence of Syntrophobacter fumaroxidans strain (MPOB(T)).
Other Publications
  
PROJECT COMPOSITION
Studies Methanogenic Syntropic Consortium
Analysis Projects Syntrophobacter fumaroxidans MPOB
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
60  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000267
Organism Name
Syntrophobacter fumaroxidans MPOB  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-DELTA  
Genus
Syntrophobacter  
Genus Synonyms
  
Species
Syntrophobacter fumaroxidans  
Subspecies
  
Species Synonyms
  
Strain
MPOB  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 10017  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.3654  
Exemplar Name
Syntrophobacter fumaroxidans  
Taxon DOI
10.1601/tx.3654  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 335543
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Deltaproteobacteria  
NCBI Order
Syntrophobacterales  
NCBI Family
Syntrophobacteraceae  
NCBI Genus
Syntrophobacter  
NCBI Species
Syntrophobacter fumaroxidans  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Food production  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 161775
Genbank 16S ID X82874
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
37  
Salinity
  
pH
6-8  
Cell Diameter
1.1-1.6 μm  
Cell Length
I .8-2.5 μm  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Pairs
Singles
Diseases None
Known Habitats Fresh water
Sludge
Wastewater
Metabolisms Propionate metabolism
Phenotypes Biodegradation
Non-Pathogen
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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