PROJECT INFORMATION
GOLD Project ID
Gp0000260  
Project Name
Magnetococcus marinus MC-1  
Other Names
  
Legacy ER Project ID
10227  
Legacy GOLD ID
Gi00343, Gc00458  
NCBI BioProject Name Magnetococcus sp. MC-1
NCBI BioProject ID 262
NCBI BioProject Accession PRJNA262
NCBI Locus Tag
Mmc1  
NCBI BioSample Accession SAMN02598452
PI Robert Blankenship
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Galina Ovchinnikova on 2017-03-22
Project Comments
  
Project Status
Complete and Published  
Project Relevance Biotechnological
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute University of Southern California (USA)
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Magnetotactic bacterium  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Entrez
Taxonomy
Database
  
Genome Publications Applied and environmental microbiology 75(14):4835-52 Complete genome sequence of the chemolithoautotrophic marine magnetotactic coccus strain MC-1.
Other Publications
  
PROJECT COMPOSITION
Study Magnetococcus marinus MC-1
Analysis Projects Magnetococcus marinus MC-1
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
3 kb, 8 kb, 40 kb  
Number Of Reads
107421  
Read Size
  
Vector
  
GC Percent
54  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000260
Organism Name
Magnetococcus marinus MC-1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Magnetococcus  
Genus Synonyms
  
Species
Magnetococcus marinus  
Subspecies
  
Species Synonyms
  
Strain
MC-1  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.23884  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 156889
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Magnetococcales  
NCBI Family
Magnetococcaceae  
NCBI Genus
Magnetococcus  
NCBI Species
Magnetococcus marinus  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Neritic zone  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Coccus-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Marine
Aquatic
Metabolisms Magnetite production
Iron reducer
Phenotypes Non-Pathogen
Energy Sources
  

 

 

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