PROJECT INFORMATION
GOLD Project ID
Gp0000249  
Project Name
Candidatus Ruthia magnifica Cm  
Other Names
  
Legacy ER Project ID
10217  
Legacy GOLD ID
Gc00468  
NCBI BioProject Name Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)
NCBI BioProject ID 16841
NCBI BioProject Accession PRJNA16841
NCBI Locus Tag
Rmag  
NCBI BioSample Accession SAMN02598375
PI Cavanaugh, Colleen M.
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
Project Status
Complete and Published  
Project Relevance Environmental
Biotechnological
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Hydrothermal vent clam symbiont  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Standards in genomic sciences 3(2):163-73 Complete genome sequence of Candidatus Ruthia magnifica.
Other Publications
  
PROJECT COMPOSITION
Study Ruthia magnifica symbiont
Analysis Projects Candidatus Ruthia magnifica Cm
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
3kb pUC, 8kb pMCL, fosmid  
Number Of Reads
17307  
Read Size
  
Vector
  
GC Percent
34  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000249
Organism Name
Candidatus Ruthia magnifica Cm  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
  
Genus Synonyms
  
Species
Candidatus Ruthia magnifica Cm  
Subspecies
  
Species Synonyms
  
Strain
Cm  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
No  
Culture Type
  
Organism Type
Natural  
Uncultured Type
Eukaryotic symbiont  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 413404
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
  
NCBI Family
  
NCBI Genus
Candidatus Ruthia  
NCBI Species
Candidatus Ruthia magnifica  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Coccus-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Symbiotic
Symbiotic Physical Interaction
Endosymbiotic intracellular  
Symbiotic Relationship
  
Symbiont Name
Calyptogena magnifica  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Marine
Host
Endosymbiont
Hydrothermal vent
Metabolisms Nitrogen fixation
Sulfur oxidizer
Phenotypes Non-Pathogen
Carbon sequestration
Energy Sources Chemoautotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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