PROJECT INFORMATION
GOLD Project ID
Gp0000244  
Project Name
Paracoccus denitrificans PD1222  
Other Names
  
Legacy ER Project ID
10213  
Legacy GOLD ID
Gi00431, Gc00472  
NCBI BioProject Name Paracoccus denitrificans PD1222
NCBI BioProject ID 13020
NCBI BioProject Accession PRJNA13020
NCBI Locus Tag
Pden  
NCBI BioSample Accession SAMN02598290
PI Stephen Spiro
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
Project Status
Complete and Published  
Project Relevance Evolution
Biotechnological
Bioremediation
Energy conservation
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Georgia Institute of Technology (USA)
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Soil organism that is a model organsim for electron transfer and energy conservation  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Taxonomy
Entrez
Wikipedia
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Study Paracoccus denitrificans
Analysis Projects Paracoccus denitrificans PD1222
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
67  
Chromosome Count
2  
Plasmid Count
1  
ORGANISM NAME
GOLD Organism ID Go0000244
Organism Name
Paracoccus denitrificans PD1222  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Paracoccus  
Genus Synonyms
  
Species
Paracoccus denitrificans  
Subspecies
  
Species Synonyms
  
Strain
PD1222  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 318586
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhodobacterales  
NCBI Family
Rhodobacteraceae  
NCBI Genus
Paracoccus  
NCBI Species
Paracoccus denitrificans  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Coccus-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
25 - 30  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Pairs
Clusters
Diseases None
Known Habitats Soil
Sewage plant
Metabolisms Stores polyhydroxybutyrate
Hydrogen oxidizer
Phenotypes
  
Energy Sources
  

 

 

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