PROJECT NAME
GOLD Project ID
Gp0000243  
Project Name
Thermofilum pendens Hrk 5  
Other Names
  
Legacy ER Project ID
10212  
Legacy GOLD ID
Gi01042, Gc00473  
NCBI BioProject Name Thermofilum pendens Hrk 5
NCBI BioProject ID 16331
NCBI BioProject Accession
PRJNA16331  
NCBI Locus Tag
Tpen  
NCBI BioSample Accession
SAMN02598366  
PI Iain Anderson
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Biotechnological
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Hyperthermophilic crenarchaeota  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Entrez
Information
Taxonomy
Database
  
Genome Publications Journal of bacteriology 190(8):2957-65 Genome sequence of Thermofilum pendens reveals an exceptional loss of biosynthetic pathways without genome reduction.
Other Publications
  
PROJECT COMPOSITION
Studies Diverse archaeal organisms
Analysis Projects Thermofilum pendens Hrk 5
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
3 Kb, 6 Kb, 40 Kb  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
58  
Chromosome Count
1  
Plasmid Count
1  
ORGANISM NAME
GOLD Organism ID Go0000243
Organism Name
Thermofilum pendens Hrk 5  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
ARCHAEAL  
Phylogeny
CRENARCHAEOTA-THERMOPROTEI  
Genus
Thermofilum  
Genus Synonyms
  
Species
Thermofilum pendens  
Subspecies
  
Species Synonyms
  
Strain
Hrk 5  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 2475  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.25  
Exemplar Name
Thermofilum pendens  
Taxon DOI
10.1601/tx.25  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 368408
NCBI Kingdom
  
NCBI Phylum
Crenarchaeota  
NCBI Class
Thermoprotei  
NCBI Order
Thermoproteales  
NCBI Family
Thermofilaceae  
NCBI Genus
Thermofilum  
NCBI Species
Thermofilum pendens  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Thermal springs  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 158001
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Hyperthermophile  
Temperature Optimum
88  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Aquatic
Fresh water
Hot spring
Metabolisms
  
Phenotypes Acidophile
Non-Pathogen
Energy Sources
  

 

 

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