PROJECT NAME
GOLD Project ID
Gp0000239  
Project Name
Shewanella amazonensis SB2B  
Other Names
  
Legacy ER Project ID
10208  
Legacy GOLD ID
Gi00550, Gc00477  
NCBI BioProject Name Shewanella amazonensis SB2B
NCBI BioProject ID 13385
NCBI BioProject Accession
PRJNA13385  
NCBI Locus Tag
Sama  
NCBI BioSample Accession
SAMN02598298  
PI Jim Fredrickson
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Auto script update processes on 2014-05-20
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Biotechnological
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Active anaerobic reducer of iron, manganese, and sulfur compounds  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Entrez
Taxonomy
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Facultative Metal-reducing Gamma proteobacteria
Analysis Projects Shewanella amazonensis SB2B
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
54  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0042647
Organism Name
Shewanella amazonensis SB2B  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Shewanella  
Genus Synonyms
  
Species
Shewanella amazonensis  
Subspecies
  
Species Synonyms
  
Strain
SB2B  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 700329  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.2917  
Exemplar Name
Shewanella amazonensis  
Taxon DOI
10.1601/tx.2917  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 326297
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Alteromonadales  
NCBI Family
Shewanellaceae  
NCBI Genus
Shewanella  
NCBI Species
Shewanella amazonensis  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Intertidal zone  
Specific Ecosystem
Sediment  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 121955
Genbank 16S ID AF005248
Synonym List
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
37C  
Salinity
  
pH
  
Cell Diameter
0.4-0.7 μm  
Cell Length
2-3 μm  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Pairs
Singles
Diseases None
Known Habitats Mud
Sediment
Metabolisms Metal reducer
Phenotypes
  
Energy Sources Heterotroph

 

 

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