PROJECT NAME
GOLD Project ID
Gp0000237  
Project Name
Mycobacterium vanbaalenii PYR-1  
Other Names
  
Legacy ER Project ID
10206  
Legacy GOLD ID
Gi01024, Gc00479  
NCBI BioProject Name Mycobacterium vanbaalenii PYR-1
NCBI BioProject ID 15761
NCBI BioProject Accession
PRJNA15761  
NCBI Locus Tag
Mvan  
NCBI BioSample Accession
SAMN02598347  
PI Charles Miller
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Bioremediation
Biotechnological
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Capable of degrading a variety of polycyclic aromatic hydrocarbons  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Isolation
Entrez
Wikipedia
Taxonomy
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Mycobacteria, 5 strains
Analysis Projects Mycobacterium vanbaalenii PYR-1
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
68  
Chromosome Count
1  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0000237
Organism Name
Mycobacterium vanbaalenii PYR-1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Mycobacterium  
Genus Synonyms
  
Species
Mycobacterium vanbaalenii  
Subspecies
  
Species Synonyms
  
Strain
PYR-1  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 7251  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.6414  
Exemplar Name
Mycobacterium vanbaalenii  
Taxon DOI
10.1601/tx.6414  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 350058
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Corynebacteriales  
NCBI Family
Mycobacteriaceae  
NCBI Genus
Mycobacterium  
NCBI Species
Mycobacterium vanbaalenii  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 160662
Genbank 16S ID X84977:{1-1491}
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
  
Temperature Optimum
24 - 37  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
Yellow  
Gram Staining
Gram+  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases None
Known Habitats Sediment
Metabolisms PAH-degrading
Phenotypes
  
Energy Sources Chemoorganotroph

 

 

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