PROJECT INFORMATION
GOLD Project ID
Gp0000237  
Project Name
Mycolicibacterium vanbaalenii PYR-1  
Other Names
Mycolicibacterium vanbaalenii PYR-1  
Legacy ER Project ID
10206  
Legacy GOLD ID
Gi01024, Gc00479  
NCBI BioProject Name Mycobacterium vanbaalenii PYR-1
NCBI BioProject ID 15761
NCBI BioProject Accession PRJNA15761
NCBI Locus Tag
Mvan  
NCBI BioSample Accession SAMN02598347
PI Charles Miller
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Supratim Mukherjee on 2018-06-05
Project Comments
  
Project Status
Complete and Published  
Project Relevance Biotechnological
Bioremediation
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Capable of degrading a variety of polycyclic aromatic hydrocarbons  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Taxonomy
Wikipedia
Entrez
Isolation
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Study Mycobacteria, 5 strains
Organism Mycolicibacterium vanbaalenii PYR-1
Analysis Projects Mycolicibacterium vanbaalenii PYR-1
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
68  
Chromosome Count
1  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0000237
Organism Name
Mycolicibacterium vanbaalenii PYR-1  
Other names (alias, synonyms, short names, common names)
Mycobacterium vanbaalenii PYR-1  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Mycolicibacterium  
Genus Synonyms
Mycobacterium  
Species
Mycolicibacterium vanbaalenii  
Subspecies
  
Species Synonyms
  
Strain
PYR-1  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 7251  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.6414  
Exemplar Name
Mycobacterium vanbaalenii  
Taxon DOI
10.1601/tx.6414  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 350058
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Corynebacteriales  
NCBI Family
Mycobacteriaceae  
NCBI Genus
Mycolicibacterium  
NCBI Species
Mycolicibacterium vanbaalenii  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 160662
Genbank 16S ID X84977:{1-1491}
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
24 - 37  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
Yellow  
Gram Staining
Gram+  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases None
Known Habitats Sediment
Metabolisms PAH-degrading
Phenotypes
  
Energy Sources Chemoorganotroph

 

 

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