PROJECT NAME
GOLD Project ID
Gp0000229  
Project Name
Polaromonas naphthalenivorans CJ2  
Other Names
  
Legacy ER Project ID
10199  
Legacy GOLD ID
Gi00957, Gc00486  
NCBI BioProject Name Polaromonas naphthalenivorans CJ2
NCBI BioProject ID 13418
NCBI BioProject Accession
PRJNA13418  
NCBI Locus Tag
Pnap  
NCBI BioSample Accession
SAMN02598302  
PI Eugene Madsen
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Auto script update processes on 2014-05-20
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Bioremediation
Environmental
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Naphthalene-degrading bacterium  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Isolation
Database
  
Genome Publications Environmental microbiology 11(9):2253-70 The genome of Polaromonas naphthalenivorans strain CJ2, isolated from coal tar-contaminated sediment, reveals physiological and metabolic versatility and evolution through extensive horizontal gene transfer.
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Polaromonas naphthalenivorans sp. Nov
Analysis Projects Polaromonas naphthalenivorans CJ2
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
  
Number Of Reads
47802  
Read Size
  
Vector
  
GC Percent
62  
Chromosome Count
1  
Plasmid Count
8  
ORGANISM NAME
GOLD Organism ID Go0000229
Organism Name
Polaromonas naphthalenivorans CJ2  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-BETA  
Genus
Polaromonas  
Genus Synonyms
  
Species
Polaromonas naphthalenivorans  
Subspecies
  
Species Synonyms
  
Strain
CJ2  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC BAA-779  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.1824  
Exemplar Name
Polaromonas naphthalenivorans  
Taxon DOI
10.1601/tx.1824  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 365044
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Betaproteobacteria  
NCBI Order
Burkholderiales  
NCBI Family
Comamonadaceae  
NCBI Genus
Polaromonas  
NCBI Species
Polaromonas naphthalenivorans  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Contaminated  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 376940
Genbank 16S ID AY166684
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Coccus-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
20  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Aquatic
Fresh water
Sediment
Metabolisms Naphthalene-degrading
PAH-degrading
Phenotypes Non-Pathogen
Energy Sources Heterotroph

 

 

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