PROJECT NAME
GOLD Project ID
Gp0000212  
Project Name
Methylibium petroleiphilum PM1  
Other Names
  
Legacy ER Project ID
10184  
Legacy GOLD ID
Gi00587, Gc00501  
NCBI BioProject Name Methylibium petroleiphilum PM1
NCBI BioProject ID 10789
NCBI BioProject Accession
PRJNA10789  
NCBI Locus Tag
Mpe  
NCBI BioSample Accession
SAMN02598264  
PI Kane, Staci
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Bioremediation
Environmental
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Lawrence Livermore National Laboratory (USA)
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Organism used restore gasoline-impacted aquifers  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Taxonomy
Entrez
Database
  
Genome Publications Journal of bacteriology Whole-genome analysis of the methyl tert-butyl ether-degrading beta-proteobacterium Methylibium petroleiphilum PM1.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Methylibium petroleiphilum PM1
Analysis Projects Methylibium petroleiphilum PM1
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
3, 8, 40 kb  
Number Of Reads
90327  
Read Size
  
Vector
  
GC Percent
69  
Chromosome Count
1  
Plasmid Count
1  
ORGANISM NAME
GOLD Organism ID Go0000212
Organism Name
Methylibium petroleiphilum PM1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-BETA  
Genus
Methylibium  
Genus Synonyms
Rubrivivax  
Species
Methylibium petroleiphilum  
Subspecies
  
Species Synonyms
gelatinosus  
Strain
PM1  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC BAA-1232  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.10044  
Exemplar Name
Methylibium petroleiphilum  
Taxon DOI
10.1601/tx.10044  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 420662
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Betaproteobacteria  
NCBI Order
Burkholderiales  
NCBI Family
  
NCBI Genus
Methylibium  
NCBI Species
Methylibium petroleiphilum  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Solid waste  
Ecosystem Type
Composting  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 677456
Genbank 16S ID AF176594:{1-1514}
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
30  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases None
Known Habitats Aquatic
Fresh water
Host
Sludge
Metabolisms Benzene degradation
MTBE degrader
Phenotypes
  
Energy Sources Methylotroph
Phototroph

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?