PROJECT NAME
GOLD Project ID
Gp0000202  
Project Name
Staphylothermus marinus F1, DSM 3639  
Other Names
  
Legacy ER Project ID
10174  
Legacy GOLD ID
Gi01036, Gc00511  
NCBI BioProject Name Staphylothermus marinus F1
NCBI BioProject ID 17449
NCBI BioProject Accession
PRJNA17449  
NCBI Locus Tag
Smar  
NCBI BioSample Accession
SAMN02598390  
PI Iain Anderson
Added By Nikos Kyrpides on 2007-11-27 00:00:00.0
Last Modified By Jon Bertsch on 2014-04-08 00:00:00.0
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Biotechnological
Tree of Life
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Hyperthermophilic archaeon  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Entrez
Information
Taxonomy
Publication
Database
  
Genome Publications 21304655
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Diverse archaeal organisms
Analysis Projects Staphylothermus marinus F1, DSM 3639
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
3Kb, 8-10Kb, 40Kb  
Number Of Reads
23766  
Read Size
  
Vector
pUC18, pMCL200, pCC1FOS  
GC Percent
36  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000202
Organism Name
Staphylothermus marinus F1, DSM 3639  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
ARCHAEAL  
Phylogeny
CRENARCHAEOTA-THERMOPROTEI  
Genus
Staphylothermus  
Genus Synonyms
  
Species
Staphylothermus marinus  
Subspecies
  
Species Synonyms
  
Strain
F1, DSM 3639  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 3639  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.45  
Exemplar Name
Staphylothermus marinus  
Taxon DOI
10.1601/tx.45  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 399550
NCBI Kingdom
  
NCBI Phylum
Crenarchaeota  
NCBI Class
Thermoprotei  
NCBI Order
Desulfurococcales  
NCBI Family
Desulfurococcaceae  
NCBI Genus
Staphylothermus  
NCBI Species
Staphylothermus marinus  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Hydrothermal vents  
Specific Ecosystem
Sediment  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 290548
Genbank 16S ID X99560
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Coccus-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Hyperthermophile  
Temperature Optimum
92  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Aquatic
Hot spring
Marine
Sediment
Metabolisms
  
Phenotypes Non-Pathogen
Energy Sources Heterotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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