PROJECT INFORMATION | |
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GOLD Project ID
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Gp0000201
|
Project Name
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Methanoculleus marisnigri JR1, DSM 1498
|
Other Names
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|
Legacy ER Project ID
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10173
|
Legacy GOLD ID
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Gi01052, Gc00512
|
NCBI BioProject Name | Methanoculleus marisnigri JR1 |
NCBI BioProject ID
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16330 |
NCBI BioProject Accession
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PRJNA16330 |
NCBI Locus Tag
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Memar
|
NCBI BioSample Accession
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SAMN02598365 |
PI | Iain Anderson |
Added By |
Nikos Kyrpides
on 2007-11-27 |
Last Modified By |
Jon Bertsch
on 2014-04-08 |
Project Comments |
|
Project Status
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Complete and Published
|
Project Relevance
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Wastewater treatment Biotechnological Energy production |
Sequencing Center
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DOE Joint Genome Institute (JGI)
(USA)
|
Collaborating Institute
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|
Funding Agency
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U.S. Department of Energy (DOE)
(USA)
|
Project Description
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Methanogen present in marine and freshwater sediments
|
Project Information Visibility
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Public |
PROJECT TYPE | |
Specimen
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Organism |
Nucleic Acid
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DNA |
Sequencing Strategy
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Whole Genome Sequencing
|
EXTERNAL PROJECT LINKS | |
JGI Portal Download | Raw Sequence Data |
Project Information
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Reference |
Database
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|
Genome Publications
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Standards in genomic sciences
1(2):189-96
Complete genome sequence of Methanoculleus marisnigri Romesser et al. 1981 type strain JR1.
|
Other Publications
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|
PROJECT COMPOSITION | |
Study |
Diverse archaeal organisms |
Organism |
Methanoculleus marisnigri JR1, DSM 1498 |
Analysis Projects |
Methanoculleus marisnigri JR1, DSM 1498 |
Number of Analysis Projects |
1 |
Number of DAPs |
0
|
SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
Level 6: Finished |
Finishing Goal
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Level 6: Finished |
Sequencing Comments
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|
Sequencing Technology
(MIGS-29)
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Sanger |
Library Method
(MIGS-28)
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3 kb, 7 kb, 36 kb
|
Number Of Reads
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29769
|
Read Size
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|
Vector
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|
GC Percent |
62
|
Chromosome Count |
1
|
Plasmid Count |
0
|
ORGANISM NAME | |
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GOLD Organism ID |
Go0000201 |
Organism Name |
Methanoculleus marisnigri JR1, DSM 1498
|
Other names (alias, synonyms, short names, common names) |
|
Organism Domain |
ARCHAEAL
|
Phylogeny |
EURYARCHAEOTA-METHANOMICROBIA
|
Genus |
Methanoculleus
|
Genus Synonyms |
|
Species |
Methanoculleus marisnigri
|
Subspecies |
|
Species Synonyms |
|
Strain |
JR1, DSM 1498
|
Strain Synonyms |
|
Serovar-Biovar |
|
Culture Collection ID |
ATCC 35101
|
Type Strain |
Yes
|
Exemplar DOI |
10.1601/ex.199
|
Exemplar Name |
Methanoculleus marisnigri
|
Taxon DOI |
10.1601/tx.181
|
Biosafety Level |
1
|
Organism Comments |
|
Cultured |
Yes
|
Culture Type |
Isolate
|
Organism Type |
Natural
|
Uncultured Type |
|
Commercial Strain |
|
Commercial Strain Comments |
|
ORGANISM TAXONOMY
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|
NCBI Taxonomy ID |
368407 |
NCBI Superkingdom |
Archaea
|
NCBI Kingdom |
|
NCBI Phylum |
Euryarchaeota
|
NCBI Class |
Methanomicrobia
|
NCBI Order |
Methanomicrobiales
|
NCBI Family |
Methanomicrobiaceae
|
NCBI Genus |
Methanoculleus
|
NCBI Species |
Methanoculleus marisnigri
|
ISOLATION CLASSIFICATION | |
Ecosystem |
Environmental
|
Ecosystem Category |
Aquatic
|
Ecosystem Type |
Marine
|
Ecosystem Subtype |
Oceanic
|
Specific Ecosystem |
Sediment
|
ORGANISM EXTERNAL REFERENCES | |
Strain Info ID |
267484 |
Genbank 16S ID |
M59134 |
GENERAL PROPERTIES | |
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Oxygen Requirement |
Anaerobe
|
Cell Shape |
Coccus-shaped
|
Motility |
Motile
|
Sporulation |
Nonsporulating
|
Temperature Range |
Mesophile
|
Temperature Optimum |
21 - 25
|
Salinity |
|
pH |
|
Cell Diameter |
|
Cell Length |
|
Color |
|
Gram Staining |
Gram-
|
Biotic Relationships | Free living |
Symbiotic Physical Interaction |
|
Symbiotic Relationship |
|
Symbiont Name |
|
Symbiont Taxon ID |
|
Cell Arrangements |
|
Diseases |
None |
Known Habitats |
Marine Sediment Aquatic |
Metabolisms |
Methanogen |
Phenotypes |
Non-Pathogen |
Energy Sources |
Lithotroph |
CYANOBACTERIA METADATA | |
Filaments |
|
Filament Type |
|
Differentiated Cells |
|
Position Of Heterocysts |
|
Cysts |
|
Mode Of Reproduction |
|
Trichome |
|
Trichome Type |
|
Carotenoids |
|
Pigments |
|
Phage Infectivity |
|
Phage Type |
|
Restriction Enzyme |
|
Toxin Production |
|
Toxin Type |
|
Secondary Metabolites |
|
Developmental Cycle |
|
Branching |
|
Gas Vesicles |
|
Gas Vesicle Type |
|
Diagnostic Inclusion Body Information |
|
Extracellular Structures |
|
Bloom Forming |
|
Pigment Type |
|
Complementary chromatic adaptation (CCA) |
|
Medium Types |
|
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