PROJECT NAME
GOLD Project ID
Gp0000201  
Project Name
Methanoculleus marisnigri JR1, DSM 1498  
Other Names
  
Legacy ER Project ID
10173  
Legacy GOLD ID
Gi01052, Gc00512  
NCBI BioProject Name Methanoculleus marisnigri JR1
NCBI BioProject ID 16330
NCBI BioProject Accession
PRJNA16330  
NCBI Locus Tag
Memar  
NCBI BioSample Accession
SAMN02598365  
PI Iain Anderson
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Biotechnological
Energy production
Wastewater treatment
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Methanogen present in marine and freshwater sediments  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information ArchaeaWeb
Information
Reference
Database
  
Genome Publications Standards in genomic sciences 1(2):189-96 Complete genome sequence of Methanoculleus marisnigri Romesser et al. 1981 type strain JR1.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Diverse archaeal organisms
Analysis Projects Methanoculleus marisnigri JR1, DSM 1498
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
3 kb, 7 kb, 36 kb  
Number Of Reads
29769  
Read Size
  
Vector
  
GC Percent
62  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000201
Organism Name
Methanoculleus marisnigri JR1, DSM 1498  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
ARCHAEAL  
Phylogeny
EURYARCHAEOTA-METHANOMICROBIA  
Genus
Methanoculleus  
Genus Synonyms
  
Species
Methanoculleus marisnigri  
Subspecies
  
Species Synonyms
  
Strain
JR1, DSM 1498  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 35101  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.199  
Exemplar Name
Methanoculleus marisnigri  
Taxon DOI
10.1601/tx.181  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 368407
NCBI Kingdom
  
NCBI Phylum
Euryarchaeota  
NCBI Class
Methanomicrobia  
NCBI Order
Methanomicrobiales  
NCBI Family
Methanomicrobiaceae  
NCBI Genus
Methanoculleus  
NCBI Species
Methanoculleus marisnigri  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Oceanic  
Specific Ecosystem
Sediment  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 267484
Genbank 16S ID M59134
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Coccus-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
21 - 25  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Aquatic
Marine
Sediment
Metabolisms Methanogen
Phenotypes Non-Pathogen
Energy Sources Lithotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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