PROJECT INFORMATION
GOLD Project ID
Gp0000196  
Project Name
Pyrobaculum calidifontis JCM 11548  
Other Names
  
Legacy ER Project ID
10168  
Legacy GOLD ID
Gi01055, Gc00517  
NCBI BioProject Name Pyrobaculum calidifontis JCM 11548
NCBI BioProject ID 18111
NCBI BioProject Accession PRJNA18111
NCBI Locus Tag
Pcal  
NCBI BioSample Accession SAMN00623060
PI Todd Lowe
Added By Nikos Kyrpides on 2007-11-27
Last Modified By JGI automated process on 2014-05-20
Project Comments
  
Project Status
Complete and Published  
Project Relevance Biotechnological
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Facultatively anaerobic hyperthermophile  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Isolation
Taxonomy
Entrez
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Study Pyrobaculum genomes
Analysis Projects Pyrobaculum calidifontis JCM 11548
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
57  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000196
Organism Name
Pyrobaculum calidifontis JCM 11548  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
ARCHAEAL  
Phylogeny
CRENARCHAEOTA-THERMOPROTEI  
Genus
Pyrobaculum  
Genus Synonyms
  
Species
Pyrobaculum calidifontis  
Subspecies
  
Species Synonyms
  
Strain
JCM 11548  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
JCM 11548  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.13561  
Exemplar Name
Pyrobaculum calidifontis  
Taxon DOI
10.1601/tx.13561  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 410359
NCBI Superkingdom
Archaea  
NCBI Kingdom
  
NCBI Phylum
Crenarchaeota  
NCBI Class
Thermoprotei  
NCBI Order
Thermoproteales  
NCBI Family
Thermoproteaceae  
NCBI Genus
Pyrobaculum  
NCBI Species
Pyrobaculum calidifontis  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Thermal springs  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 556407
Genbank 16S ID AB078332
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Hyperthermophile  
Temperature Optimum
90 - 95  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Hot spring
Aquatic
Fresh water
Metabolisms
  
Phenotypes Non-Pathogen
Energy Sources Heterotroph

 

 

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