PROJECT NAME
GOLD Project ID
Gp0000189  
Project Name
Shewanella loihica PV-4  
Other Names
  
Legacy ER Project ID
10161  
Legacy GOLD ID
Gi00556, Gc00524  
NCBI BioProject Name Shewanella loihica PV-4
NCBI BioProject ID 13906
NCBI BioProject Accession
PRJNA13906  
NCBI Locus Tag
Shew  
NCBI BioSample Accession
SAMN00623064  
PI Jim Fredrickson
Added By Nikos Kyrpides on 2007-11-27 00:00:00.0
Last Modified By Auto script update processes on 2014-05-20 00:00:00.0
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Bioremediation
Environmental
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Marine bacterium isolated near Hawaii  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Entrez
Taxonomy
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Facultative Metal-reducing Gamma proteobacteria
Analysis Projects Shewanella loihica PV-4
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
54  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000189
Organism Name
Shewanella loihica PV-4  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Shewanella  
Genus Synonyms
  
Species
Shewanella loihica  
Subspecies
  
Species Synonyms
  
Strain
PV-4  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC BAA-1088  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.10248  
Exemplar Name
Shewanella loihica  
Taxon DOI
10.1601/tx.10248  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 323850
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Alteromonadales  
NCBI Family
Shewanellaceae  
NCBI Genus
Shewanella  
NCBI Species
Shewanella loihica  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Hydrothermal vents  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 690434
Genbank 16S ID DQ286387
Synonym List
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Psychrophile  
Temperature Optimum
18 C  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Pairs
Singles
Diseases None
Known Habitats Aquatic
Hot spring
Hydrothermal vent
Marine
Metabolisms Iron reducer
Uranium reducer
Phenotypes
  
Energy Sources Heterotroph

 

 

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