PROJECT NAME
GOLD Project ID
Gp0000187  
Project Name
Herminiimonas arsenicoxydans ULPAs1  
Other Names
  
Legacy ER Project ID
10159  
Legacy GOLD ID
Gi00789, Gc00526  
NCBI BioProject Name Herminiimonas arsenicoxydans
NCBI BioProject ID 13467
NCBI BioProject Accession
PRJNA13467  
NCBI Locus Tag
HEAR  
NCBI BioSample Accession
SAMEA3138226  
PI Barbe V
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Biotechnological
Detoxification
Environmental
Sequencing Center CEA Genoscope (France)
Collaborating Institute
  
Funding Agency
  
Project Description
A bacterium capable of oxidizing and reducing arsenic.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Isolation
Entrez
Taxonomy
Database
  
Genome Publications PLoS genetics A tale of two oxidation states: bacterial colonization of arsenic-rich environments.
Other Publications
  
PROJECT COMPOSITION
Studies Herminiimonas arsenicoxydans ULPAs1
Analysis Projects Herminiimonas arsenicoxydans ULPAs1
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
3-4, 8-10, 20 kb  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
54  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000187
Organism Name
Herminiimonas arsenicoxydans ULPAs1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-BETA  
Genus
Herminiimonas  
Genus Synonyms
  
Species
Herminiimonas arsenicoxydans  
Subspecies
  
Species Synonyms
  
Strain
ULPAs1  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 17148  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.10233  
Exemplar Name
Herminiimonas arsenicoxydans  
Taxon DOI
10.1601/tx.10233  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 204773
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Betaproteobacteria  
NCBI Order
Burkholderiales  
NCBI Family
Oxalobacteraceae  
NCBI Genus
Herminiimonas  
NCBI Species
Herminiimonas arsenicoxydans  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 689940
Genbank 16S ID AY728038
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Aquatic
Fresh water
Host
Metabolisms
  
Phenotypes Arsenic metabolizer
Detoxification
Non-Pathogen
Energy Sources Heterotroph

 

 

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