PROJECT NAME
GOLD Project ID
Gp0000185  
Project Name
Methanocella arvoryzae MRE50  
Other Names
  
Legacy ER Project ID
10157  
Legacy GOLD ID
Gc00528  
NCBI BioProject Name uncultured methanogenic archaeon RC-I
NCBI BioProject ID 19641
NCBI BioProject Accession
PRJNA19641  
NCBI Locus Tag
LRC51  
NCBI BioSample Accession
  
PI Liesack W
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Auto script update processes on 2014-08-18
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Biotechnological
Sequencing Center Max Planck Institute (Germany)
Collaborating Institute
  
Funding Agency
  
Project Description
A key methano producer in the rhizome of rice  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Entrez
Taxonomy
Database
  
Genome Publications "Science (New York, N.Y.)" Genome of Rice Cluster I archaea--the key methane producers in the rice rhizosphere.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Methanocella sp. RC-I
Analysis Projects Methanocella arvoryzae MRE50
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
1.5 kb, 3.5 kb  
Number Of Reads
41246  
Read Size
  
Vector
pUC19  
GC Percent
55  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000185
Organism Name
Methanocella arvoryzae MRE50  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
ARCHAEAL  
Phylogeny
EURYARCHAEOTA-METHANOMICROBIA  
Genus
Methanocella  
Genus Synonyms
  
Species
Methanocella arvoryzae  
Subspecies
  
Species Synonyms
  
Strain
MRE50  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 22066  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.20238  
Exemplar Name
Methanocella arvoryzae  
Taxon DOI
10.1601/tx.20238  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 351160
NCBI Kingdom
  
NCBI Phylum
Euryarchaeota  
NCBI Class
Methanomicrobia  
NCBI Order
Methanocellales  
NCBI Family
Methanocellaceae  
NCBI Genus
Methanocella  
NCBI Species
Methanocella arvoryzae  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Agricultural land  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Host
Soil
Metabolisms Methanogen
Phenotypes Non-Pathogen
Energy Sources Lithotroph

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?