Studies
|
56,290 |
|
Biosamples
|
195,545 |
|
Sequencing Projects
|
523,554 |
|
Analysis Projects
|
381,673 |
| Organisms | 484,046 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0000175
|
|
Project Name
|
Polynucleobacter asymbioticus QLW-P1DMWA-1
|
|
Other Names
|
|
|
Legacy ER Project ID
|
10148
|
|
Legacy GOLD ID
|
Gi01032, Gc00537
|
| NCBI BioProject Name | Polynucleobacter asymbioticus QLW-P1DMWA-1 |
|
NCBI BioProject Accession
|
PRJNA16679 |
|
NCBI Locus Tag
|
Pnuc
|
|
NCBI BioSample Accession
|
SAMN02598371 |
|
Source Sample ID
|
|
| PI | Hahn MW |
| Added By | Nikos Kyrpides on 2007-11-27 |
| Last Modified By | Supratim Mukherjee on 2020-11-11 |
| Project Comments |
|
|
Project Status
|
Complete and Published
|
|
Project Relevance
|
Biotechnological Ecological |
|
Sequencing Center
|
DOE Joint Genome Institute (JGI)
(USA)
|
|
Collaborating Institute
|
|
|
Funding Agency
|
U.S. Department of Energy (DOE)
(USA)
|
|
Project Description
|
Common freshwater bacterium
|
| Is JGI Project |
Yes
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
JGI Data Utilization Status
|
|
|
JGI Award DOI
|
|
| JGI Portal Download | Raw Sequence Data |
|
Genome Publications
|
Standards in genomic sciences: 6(1):74-83 Complete genome sequence of Polynucleobacter necessarius subsp. asymbioticus type strain (QLW-P1DMWA-1(T)). PubMed: 22675600 DOI: 10.4056/sigs.2395367 |
|
Other Publications
|
PloS one: 7(3):e32772 The passive yet successful way of planktonic life: genomic and experimental analysis of the ecology of a free-living polynucleobacter population. PubMed: 22448227 DOI: 10.1371/journal.pone.0032772 Applied and environmental microbiology: Microdiversification of a Pelagic Polynucleobacter Species Is Mainly Driven by Acquisition of Genomic Islands from a Partially Interspecific Gene Pool. PubMed: 27836842 DOI: e02266-16 |
|
Ignored Publications
|
|
|
Unassigned Publications
|
|
| SRA Experiment |
|
| PROJECT COMPOSITION | |
| Study |
Polynucleobacter |
| Organism |
Polynucleobacter asymbioticus QLW-P1DMWA-1 |
| Analysis Projects |
Polynucleobacter asymbioticus QLW-P1DMWA-1 |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
|
Finishing Goal
|
Level 6: Finished |
|
Contamination Screening Input
|
|
|
DNA Amplification Method
|
|
|
Single Cell Lysis Protocol
|
|
|
Single Cell Lysis Approach
|
|
|
Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
Sanger |
|
Library Method
(MIGS-28)
|
|
|
Library Layout
|
|
|
Library Screening Method
|
|
|
Number Of Reads
|
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
45
|
| Chromosome Count |
1
|
| Plasmid Count |
0
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0000175 |
| Organism Name |
Polynucleobacter asymbioticus QLW-P1DMWA-1
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
PROTEOBACTERIA-BETA
|
| Genus |
Polynucleobacter
|
| Genus Synonyms |
|
| Species |
Polynucleobacter asymbioticus
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
QLW-P1DMWA-1
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
DSM 18221
|
| Type Strain |
Yes
|
| Exemplar DOI |
10.1601/ex.14569
|
| Exemplar Name |
Polynucleobacter asymbioticus
|
| Taxon DOI |
10.1601/tx.28773
|
| Biosafety Level |
1
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
312153 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Pseudomonadota
|
| NCBI Class |
Betaproteobacteria
|
| NCBI Order |
Burkholderiales
|
| NCBI Family |
Burkholderiaceae
|
| NCBI Genus |
Polynucleobacter
|
| NCBI Species |
Polynucleobacter asymbioticus
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Environmental
|
| Ecosystem Category |
Aquatic
|
| Ecosystem Type |
Freshwater
|
| Ecosystem Subtype |
Pond
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
844713 |
| Genbank 16S ID |
AJ879783 |
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Aerobe
|
| Cell Shape |
Rod-shaped
|
| Motility |
Nonmotile
|
| Sporulation |
Nonsporulating
|
| Temperature Range |
Mesophile
|
| Salinity |
|
| pH |
|
| Cell Diameter |
0.3 - 0.5 um
|
| Cell Length |
0.7 - 3.0 um
|
| Color |
|
| Gram Staining |
Gram-
|
| Biotic Relationships | Free living |
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
|
| Diseases |
None |
| Known Habitats |
Marine Aquatic Host Fresh water Ponds |
| Metabolisms |
|
| Phenotypes |
|
| Energy Sources |
Chemoorganotroph |
| CYANOBACTERIA METADATA | |
| Filaments |
|
| Filament Type |
|
| Differentiated Cells |
|
| Position Of Heterocysts |
|
| Cysts |
|
| Mode Of Reproduction |
|
| Trichome |
|
| Trichome Type |
|
| Carotenoids |
|
| Pigments |
|
| Phage Infectivity |
|
| Phage Type |
|
| Restriction Enzyme |
|
| Toxin Production |
|
| Toxin Type |
|
| Secondary Metabolites |
|
| Developmental Cycle |
|
| Branching |
|
| Gas Vesicles |
|
| Gas Vesicle Type |
|
| Diagnostic Inclusion Body Information |
|
| Extracellular Structures |
|
| Bloom Forming |
|
| Pigment Type |
|
| Complementary chromatic adaptation (CCA) |
|
| Medium Types |
|
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