PROJECT NAME
GOLD Project ID
Gp0000175  
Project Name
Polynucleobacter necessarius asymbioticus QLW-P1DMWA-1  
Other Names
  
Legacy ER Project ID
10148  
Legacy GOLD ID
Gi01032, Gc00537  
NCBI BioProject Name Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1
NCBI BioProject ID 16679
NCBI BioProject Accession
PRJNA16679  
NCBI Locus Tag
Pnuc  
NCBI BioSample Accession
SAMN02598371  
PI Hahn MW
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Biotechnological
Ecological
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Common freshwater bacterium  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Information
Database
  
Genome Publications 22675600
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Polynucleobacter
Analysis Projects Polynucleobacter necessarius asymbioticus QLW-P1DMWA-1
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
45  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000175
Organism Name
Polynucleobacter necessarius asymbioticus QLW-P1DMWA-1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-BETA  
Genus
Polynucleobacter  
Genus Synonyms
  
Species
Polynucleobacter necessarius  
Subspecies
asymbioticus  
Species Synonyms
  
Strain
QLW-P1DMWA-1  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 18221  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.14569  
Exemplar Name
Polynucleobacter necessarius asymbioticus  
Taxon DOI
10.1601/tx.14569  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 312153
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Betaproteobacteria  
NCBI Order
Burkholderiales  
NCBI Family
Burkholderiaceae  
NCBI Genus
Polynucleobacter  
NCBI Species
Polynucleobacter asymbioticus  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Ponds  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 844713
Genbank 16S ID AJ879783
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
0.3 - 0.5 um  
Cell Length
0.7 - 3.0 um  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Aquatic
Fresh water
Host
Marine
Ponds
Metabolisms
  
Phenotypes
  
Energy Sources Chemoorganotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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