PROJECT NAME
GOLD Project ID
Gp0000173  
Project Name
Salinispora tropica CNB-440  
Other Names
  
Legacy ER Project ID
10146  
Legacy GOLD ID
Gi01034, Gc00539  
NCBI BioProject Name Salinispora tropica CNB-440
NCBI BioProject ID 16342
NCBI BioProject Accession
PRJNA16342  
NCBI Locus Tag
Strop  
NCBI BioSample Accession
SAMN02598367  
PI paul jensen
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Biotechnological
Cancer treatment
Comparative analysis
Medical
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
An obligate marine actinomycete  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Taxonomy
Entrez
Database
  
Genome Publications Proceedings of the National Academy of Sciences of the United States of America Genome sequencing reveals complex secondary metabolome in the marine actinomycete Salinispora tropica.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Marine Actinomycetes
Analysis Projects Salinispora tropica CNB-440
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
69  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000173
Organism Name
Salinispora tropica CNB-440  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Salinispora  
Genus Synonyms
  
Species
Salinispora tropica  
Subspecies
  
Species Synonyms
  
Strain
CNB-440  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 44818  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.9670  
Exemplar Name
Salinispora tropica  
Taxon DOI
10.1601/tx.9670  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 369723
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Micromonosporales  
NCBI Family
Micromonosporaceae  
NCBI Genus
Salinispora  
NCBI Species
Salinispora tropica  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Geologic  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 621777
Genbank 16S ID AY040617
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Filament-shaped  
Motility
Nonmotile  
Sporulation
Sporulating  
Temperature Range
Mesophile  
Temperature Optimum
28  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Clusters
Singles
Diseases None
Known Habitats Marine
Sand
Metabolisms
  
Phenotypes Non-Pathogen
Salinosporamide producer
Energy Sources
  

 

 

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