PROJECT NAME
GOLD Project ID
Gp0000163  
Project Name
Metallosphaera sedula DSM 5348  
Other Names
  
Legacy ER Project ID
10137  
Legacy GOLD ID
Gi01305, Gc00548  
NCBI BioProject Name Metallosphaera sedula DSM 5348
NCBI BioProject ID 17447
NCBI BioProject Accession
PRJNA17447  
NCBI Locus Tag
Msed  
NCBI BioSample Accession
SAMN02598389  
PI Paul Blum
Added By Nikos Kyrpides on 2007-11-27 00:00:00.0
Last Modified By Jon Bertsch on 2014-04-08 00:00:00.0
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Bioremediation
Biotechnological
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Acid-loving thermophile which can oxidize coal and pyrite  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Entrez
Taxonomy
Database
  
Genome Publications Applied and environmental microbiology The genome sequence of the metal-mobilizing, extremely thermoacidophilic archaeon Metallosphaera sedula provides insights into bioleaching-associated metabolism.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Metallosphaera sedula DSM 5348
Analysis Projects Metallosphaera sedula DSM 5348
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
3 kb, 8 kb, 40 kb  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
46  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000163
Organism Name
Metallosphaera sedula DSM 5348  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
ARCHAEAL  
Phylogeny
CRENARCHAEOTA-THERMOPROTEI  
Genus
Metallosphaera  
Genus Synonyms
  
Species
Metallosphaera sedula  
Subspecies
  
Species Synonyms
  
Strain
DSM 5348  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 5348  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.80  
Exemplar Name
Metallosphaera sedula  
Taxon DOI
10.1601/tx.80  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 399549
NCBI Kingdom
  
NCBI Phylum
Crenarchaeota  
NCBI Class
Thermoprotei  
NCBI Order
Sulfolobales  
NCBI Family
Sulfolobaceae  
NCBI Genus
Metallosphaera  
NCBI Species
Metallosphaera sedula  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Thermal springs  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 115548
Genbank 16S ID X90481
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Coccus-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Thermophile  
Temperature Optimum
70  
Salinity
  
pH
2  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases None
Known Habitats Aquatic
Ponds
Metabolisms Iron oxidizer
Phenotypes Metal-mobilizing
Non-Pathogen
Thermoacidophile
Energy Sources
  

 

 

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